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3OY8
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GALECTIN-1 IN COMPLEX WITH LACTOBIONIC ACID
Authors
:
H. Blanchard, P. M. Collins
Date
:
23 Sep 10 (Deposition) - 03 Nov 10 (Release) - 03 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Carbohydrate Binding Protein, Galectin, Lactobionic Acid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. A. Stannard, P. M. Collins, K. Ito, E. M. Sullivan, S. A. Scott, E. Gabutero, I. Darren Grice, P. Low, U. J. Nilsson, H. Leffler, H. Blanchard, S. J. Ralph
Galectin Inhibitory Disaccharides Promote Tumour Immunity I A Breast Cancer Model
Cancer Lett. 2010
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
1b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
1c: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEc)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
2c: S-HYDROXYCYSTEINE (CSOc)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: GLUCONIC ACID (GCOa)
4b: GLUCONIC ACID (GCOb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CME
3
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
2
CSO
3
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
GCO
2
Ligand/Ion
GLUCONIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:44 , ASN A:46 , ARG A:48 , HIS A:52 , ASN A:61 , GLU A:71 , HOH A:149 , GCO A:501
BINDING SITE FOR RESIDUE GAL A 500
2
AC2
SOFTWARE
ARG A:48 , GLU A:71 , ARG A:73 , GAL A:500 , THR B:70
BINDING SITE FOR RESIDUE GCO A 501
3
AC3
SOFTWARE
HIS B:44 , ASN B:46 , ARG B:48 , HIS B:52 , ASN B:61 , GLU B:71 , HOH B:142 , HOH B:168 , GCO B:501
BINDING SITE FOR RESIDUE GAL B 500
4
AC4
SOFTWARE
GLN A:72 , ARG B:48 , HIS B:52 , GLU B:71 , ARG B:73 , GAL B:500
BINDING SITE FOR RESIDUE GCO B 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:3-134,B:3-134)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG1_HUMAN
4-135
2
A:3-134
B:3-134
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Exons
(4, 8)
Info
All Exons
Exon 1.1a (A:1-2 | B:1-2)
Exon 1.3b (A:3-29 | B:3-29)
Exon 1.5c (A:29-86 | B:29-86)
Exon 1.6c (A:87-134 | B:87-134)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3b
3: Boundary 1.3b/1.5c
4: Boundary 1.5c/1.6c
5: Boundary 1.6c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000215909
1a
ENSE00001045616
chr22:
38071615-38071718
104
LEG1_HUMAN
1-3
3
2
A:1-2
B:1-2
2
2
1.3b
ENST00000215909
3b
ENSE00001258442
chr22:
38072993-38073072
80
LEG1_HUMAN
4-30
27
2
A:3-29
B:3-29
27
27
1.5c
ENST00000215909
5c
ENSE00001746974
chr22:
38074490-38074661
172
LEG1_HUMAN
30-87
58
2
A:29-86
B:29-86
58
58
1.6c
ENST00000215909
6c
ENSE00001173615
chr22:
38075610-38075813
204
LEG1_HUMAN
88-135
48
2
A:87-134
B:87-134
48
48
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3oy8a_ (A:)
1b: SCOP_d3oy8b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Galectin (animal S-lectin)
(75)
Protein domain
:
Galectin-1
(22)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d3oy8a_
A:
1b
d3oy8b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Gal_bind_lectin_3oy8B01 (B:3-133)
1b: PFAM_Gal_bind_lectin_3oy8B02 (B:3-133)
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Clan
:
Concanavalin
(293)
Family
:
Gal-bind_lectin
(60)
Homo sapiens (Human)
(25)
1a
Gal-bind_lectin-3oy8B01
B:3-133
1b
Gal-bind_lectin-3oy8B02
B:3-133
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Asymmetric Unit 1
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