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3OXM
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH, TL-ACETATE SOAKED
Authors
:
L. Huang, A. Serganov, D. J. Patel
Date
:
21 Sep 10 (Deposition) - 29 Dec 10 (Release) - 29 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Gene Expression Regulator, Glycine Riboswitch, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Huang, A. Serganov, D. J. Patel
Structural Insights Into Ligand Recognition By A Sensing Domain Of The Cooperative Glycine Riboswitch.
Mol. Cell V. 40 774 2010
[
close entry info
]
Hetero Components
(5, 42)
Info
All Hetero Components
1a: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCa)
1b: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: GLYCINE (GLYa)
3b: GLYCINE (GLYb)
4a: MAGNESIUM ION (MGa)
4aa: MAGNESIUM ION (MGaa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
4j: MAGNESIUM ION (MGj)
4k: MAGNESIUM ION (MGk)
4l: MAGNESIUM ION (MGl)
4m: MAGNESIUM ION (MGm)
4n: MAGNESIUM ION (MGn)
4o: MAGNESIUM ION (MGo)
4p: MAGNESIUM ION (MGp)
4q: MAGNESIUM ION (MGq)
4r: MAGNESIUM ION (MGr)
4s: MAGNESIUM ION (MGs)
4t: MAGNESIUM ION (MGt)
4u: MAGNESIUM ION (MGu)
4v: MAGNESIUM ION (MGv)
4w: MAGNESIUM ION (MGw)
4x: MAGNESIUM ION (MGx)
4y: MAGNESIUM ION (MGy)
4z: MAGNESIUM ION (MGz)
5a: THALLIUM (I) ION (TLa)
5b: THALLIUM (I) ION (TLb)
5c: THALLIUM (I) ION (TLc)
5d: THALLIUM (I) ION (TLd)
5e: THALLIUM (I) ION (TLe)
5f: THALLIUM (I) ION (TLf)
5g: THALLIUM (I) ION (TLg)
5h: THALLIUM (I) ION (TLh)
5i: THALLIUM (I) ION (TLi)
5j: THALLIUM (I) ION (TLj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CCC
2
Mod. Nucleotide
CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2
GDP
1
Mod. Nucleotide
GUANOSINE-5'-DIPHOSPHATE
3
GLY
2
Ligand/Ion
GLYCINE
4
MG
27
Ligand/Ion
MAGNESIUM ION
5
TL
10
Ligand/Ion
THALLIUM (I) ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G A:32 , A A:34 , G A:35 , G A:36 , C A:68 , U A:69 , A A:71 , MG A:102 , HOH A:115
BINDING SITE FOR RESIDUE GLY A 89
02
AC2
SOFTWARE
G B:32 , A B:34 , G B:35 , G B:36 , C B:68 , U B:69 , A B:71 , MG B:111 , HOH B:117
BINDING SITE FOR RESIDUE GLY B 89
03
AC3
SOFTWARE
G B:17 , U B:18 , U B:20 , A B:22 , U B:23
BINDING SITE FOR RESIDUE TL B 201
04
AC4
SOFTWARE
G B:25
BINDING SITE FOR RESIDUE TL B 202
05
AC5
SOFTWARE
G B:8 , G B:80
BINDING SITE FOR RESIDUE TL B 203
06
AC6
SOFTWARE
G A:8 , G A:80
BINDING SITE FOR RESIDUE TL A 204
07
AC7
SOFTWARE
U A:69 , C A:70 , A A:71 , G A:72
BINDING SITE FOR RESIDUE TL A 205
08
AC8
SOFTWARE
A A:41 , G A:42 , C A:43 , G A:60 , G A:62
BINDING SITE FOR RESIDUE TL A 206
09
AC9
SOFTWARE
G A:73
BINDING SITE FOR RESIDUE TL A 207
10
BC1
SOFTWARE
U B:6 , G B:8
BINDING SITE FOR RESIDUE TL B 208
11
BC2
SOFTWARE
G B:1 , G B:2
BINDING SITE FOR RESIDUE TL B 209
12
BC3
SOFTWARE
A A:78
BINDING SITE FOR RESIDUE TL A 210
13
BC4
SOFTWARE
A A:34 , G A:35 , HOH A:111 , HOH A:138 , HOH A:139 , HOH A:140
BINDING SITE FOR RESIDUE MG A 101
14
BC5
SOFTWARE
G A:32 , A A:33 , C A:66 , GLY A:89 , HOH A:115 , HOH A:141 , HOH A:142
BINDING SITE FOR RESIDUE MG A 102
15
BC6
SOFTWARE
A A:22 , A A:75
BINDING SITE FOR RESIDUE MG A 103
16
BC7
SOFTWARE
C A:74 , A A:75 , A A:76
BINDING SITE FOR RESIDUE MG A 104
17
BC8
SOFTWARE
A A:33
BINDING SITE FOR RESIDUE MG A 106
18
BC9
SOFTWARE
HOH A:119 , HOH A:120 , HOH A:121 , HOH A:122 , HOH A:123 , HOH A:143
BINDING SITE FOR RESIDUE MG A 109
19
CC1
SOFTWARE
C B:74 , A B:75 , A B:76 , HOH B:106 , HOH B:107 , HOH B:116
BINDING SITE FOR RESIDUE MG B 110
20
CC2
SOFTWARE
G B:32 , A B:33 , C B:66 , GLY B:89 , HOH B:109 , HOH B:117 , HOH B:118
BINDING SITE FOR RESIDUE MG B 111
21
CC3
SOFTWARE
HOH A:124 , HOH A:125 , HOH A:129 , HOH A:144 , HOH A:145 , HOH A:146
BINDING SITE FOR RESIDUE MG A 112
22
CC4
SOFTWARE
G A:50
BINDING SITE FOR RESIDUE MG A 113
23
CC5
SOFTWARE
A A:21
BINDING SITE FOR RESIDUE MG A 114
24
CC6
SOFTWARE
A B:34 , G B:35 , HOH B:114
BINDING SITE FOR RESIDUE MG B 115
25
CC7
SOFTWARE
HOH A:130 , HOH A:131 , HOH A:132 , HOH A:133 , HOH A:134 , HOH A:135
BINDING SITE FOR RESIDUE MG A 116
26
CC8
SOFTWARE
G A:10
BINDING SITE FOR RESIDUE MG A 117
27
CC9
SOFTWARE
U A:20 , A A:21
BINDING SITE FOR RESIDUE MG A 118
28
DC1
SOFTWARE
A B:75
BINDING SITE FOR RESIDUE MG B 120
29
DC2
SOFTWARE
U B:18 , U B:20
BINDING SITE FOR RESIDUE MG B 121
30
DC3
SOFTWARE
A B:52
BINDING SITE FOR RESIDUE MG B 122
31
DC4
SOFTWARE
U B:69 , C B:70 , A B:71 , G B:72
BINDING SITE FOR RESIDUE MG B 123
32
DC5
SOFTWARE
A B:78 , G B:79
BINDING SITE FOR RESIDUE MG B 124
33
DC6
SOFTWARE
G B:62
BINDING SITE FOR RESIDUE MG B 125
34
DC7
SOFTWARE
G A:62
BINDING SITE FOR RESIDUE MG A 126
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Asym.Unit (169 KB)
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Biol.Unit 3 (161 KB)
Header - Biol.Unit 3
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