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3OXI
Asym. Unit
Info
Asym.Unit (62 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
DESIGN AND SYNTHESIS OF DISUBSTITUTED THIOPHENE AND THIAZOLE BASED INHIBITORS OF JNK FOR THE TREATMENT OF NEURODEGENERATIVE DISEASES
Authors
:
R. K. Hom, S. Bowers, J. Sealy, A. Truong, G. D. Probst, M. Neitzel, J. Nei L. Fang, L. Brogley, J. Wu, A. W. Konradi, H. Sham, G. Toth, H. Pan, N. Yao D. R. Artis
Date
:
21 Sep 10 (Deposition) - 04 May 11 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,J
Biol. Unit 1: A,J (1x)
Keywords
:
Jnk Inhibitors, Neurodegenerative Diseases, Kinase, Transferase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. K. Hom, S. Bowers, J. M. Sealy, A. P. Truong, G. D. Probst, M. L. Neitzel, R. J. Neitz, L. Fang, L. Brogley, J. Wu, A. W. Konradi, H. L. Sham, G. Toth, H. Pan, N. Yao, D. R. Artis, K. Quinn, J. M. Sauer, K. Powell, Z. Ren, F. Bard, T. A. Yednock, I. Griswold-Prenner
Design And Synthesis Of Disubstituted Thiophene And Thiazol Based Inhibitors Of Jnk.
Bioorg. Med. Chem. Lett. V. 20 7303 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: METHYL 3-[(THIOPHEN-2-YLACETYL)AMI... (SYYa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SYY
1
Ligand/Ion
METHYL 3-[(THIOPHEN-2-YLACETYL)AMINO]THIOPHENE-2-CARBOXYLATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:70 , GLY A:71 , VAL A:78 , ALA A:91 , GLU A:147 , LEU A:148 , MET A:149 , ASN A:152 , VAL A:196 , LEU A:206
BINDING SITE FOR RESIDUE SYY A 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: MAPK (A:99-201)
2: PROTEIN_KINASE_ST (A:185-197)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MAPK
PS01351
MAP kinase signature.
MK10_HUMAN
99-201
1
A:99-201
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MK10_HUMAN
185-197
1
A:185-197
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Exons
(10, 10)
Info
All Exons
Exon 1.19g (A:46-84)
Exon 1.20b (A:85-104)
Exon 1.21b (A:104-150)
Exon 1.22b (A:151-206)
Exon 1.23c (A:206-230 (gaps))
Exon 1.28b (A:230-291)
Exon 1.29 (A:291-332 (gaps))
Exon 1.30 (A:333-354)
Exon 1.31 (A:354-368)
Exon 1.32h (A:383-400)
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All Exon Boundaries
01: Boundary 1.17d/1.19g
02: Boundary 1.19g/1.20b
03: Boundary 1.20b/1.21b
04: Boundary 1.21b/1.22b
05: Boundary 1.22b/1.23c
06: Boundary 1.23c/1.28b
07: Boundary 1.28b/1.29
08: Boundary 1.29/1.30
09: Boundary 1.30/1.31
10: Boundary 1.31/1.32h
11: Boundary 1.32h/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6b
ENST00000395169
6b
ENSE00002029030
chr4:
87281269-87280811
459
MK10_HUMAN
-
0
0
-
-
1.11c
ENST00000395169
11c
ENSE00001352600
chr4:
87275797-87275683
115
MK10_HUMAN
-
0
0
-
-
1.14c
ENST00000395169
14c
ENSE00001520792
chr4:
87115560-87115462
99
MK10_HUMAN
-
0
0
-
-
1.17d
ENST00000395169
17d
ENSE00002157878
chr4:
87080620-87080451
170
MK10_HUMAN
1-41
41
0
-
-
1.19g
ENST00000395169
19g
ENSE00002201403
chr4:
87028505-87028376
130
MK10_HUMAN
41-84
44
1
A:46-84
39
1.20b
ENST00000395169
20b
ENSE00001800335
chr4:
87024397-87024339
59
MK10_HUMAN
85-104
20
1
A:85-104
20
1.21b
ENST00000395169
21b
ENSE00001654569
chr4:
87023185-87023047
139
MK10_HUMAN
104-150
47
1
A:104-150
47
1.22b
ENST00000395169
22b
ENSE00001609893
chr4:
87022370-87022205
166
MK10_HUMAN
151-206
56
1
A:151-206
56
1.23c
ENST00000395169
23c
ENSE00001789401
chr4:
87019748-87019677
72
MK10_HUMAN
206-230
25
1
A:206-230 (gaps)
25
1.28b
ENST00000395169
28b
ENSE00000729500
chr4:
86989108-86988926
183
MK10_HUMAN
230-291
62
1
A:230-291
62
1.29
ENST00000395169
29
ENSE00000729498
chr4:
86985543-86985419
125
MK10_HUMAN
291-332
42
1
A:291-332 (gaps)
42
1.30
ENST00000395169
30
ENSE00001076721
chr4:
86952584-86952521
64
MK10_HUMAN
333-354
22
1
A:333-354
22
1.31
ENST00000395169
31
ENSE00001218615
chr4:
86950427-86950350
78
MK10_HUMAN
354-380
27
1
A:354-368
15
1.32h
ENST00000395169
32h
ENSE00001811960
chr4:
86938523-86936276
2248
MK10_HUMAN
380-426
47
1
A:383-400
18
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3oxia_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
c-jun N-terminal kinase (jnk3s)
(29)
Human (Homo sapiens) [TaxId: 9606]
(29)
1a
d3oxia_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_3oxiA01 (A:64-359)
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Clans
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)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-3oxiA01
A:64-359
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Asymmetric Unit 1
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