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3OXD
Biol. Unit 2
Info
Asym.Unit (168 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH WITH TWO MUTATIONS
Authors
:
L. Huang, A. Serganov, D. J. Patel
Date
:
21 Sep 10 (Deposition) - 29 Dec 10 (Release) - 29 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Gene Expression Regulator, Glycine Riboswitch, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Huang, A. Serganov, D. J. Patel
Structural Insights Into Ligand Recognition By A Sensing Domain Of The Cooperative Glycine Riboswitch.
Mol. Cell V. 40 774 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCa)
1b: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: MAGNESIUM ION (MGa)
3aa: MAGNESIUM ION (MGaa)
3ab: MAGNESIUM ION (MGab)
3ac: MAGNESIUM ION (MGac)
3ad: MAGNESIUM ION (MGad)
3ae: MAGNESIUM ION (MGae)
3af: MAGNESIUM ION (MGaf)
3ag: MAGNESIUM ION (MGag)
3ah: MAGNESIUM ION (MGah)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
3o: MAGNESIUM ION (MGo)
3p: MAGNESIUM ION (MGp)
3q: MAGNESIUM ION (MGq)
3r: MAGNESIUM ION (MGr)
3s: MAGNESIUM ION (MGs)
3t: MAGNESIUM ION (MGt)
3u: MAGNESIUM ION (MGu)
3v: MAGNESIUM ION (MGv)
3w: MAGNESIUM ION (MGw)
3x: MAGNESIUM ION (MGx)
3y: MAGNESIUM ION (MGy)
3z: MAGNESIUM ION (MGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CCC
1
Mod. Nucleotide
CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2
GDP
-1
Mod. Nucleotide
GUANOSINE-5'-DIPHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(13, 13)
Info
All Sites
01: BC8 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC3 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC5 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
BC8
SOFTWARE
HOH A:144 , HOH A:145 , HOH B:137 , HOH B:138 , HOH B:139 , HOH B:140
BINDING SITE FOR RESIDUE MG B 106
02
BC9
SOFTWARE
C B:39 , G B:62 , HOH B:141 , HOH B:142 , HOH B:143 , HOH B:144 , HOH B:145
BINDING SITE FOR RESIDUE MG B 113
03
CC1
SOFTWARE
C B:74 , A B:75 , A B:76 , HOH B:146 , HOH B:147 , HOH B:148
BINDING SITE FOR RESIDUE MG B 114
04
CC2
SOFTWARE
HOH B:149 , HOH B:150 , HOH B:151 , HOH B:152 , HOH B:153 , HOH B:154
BINDING SITE FOR RESIDUE MG B 131
05
CC3
SOFTWARE
C B:66 , U B:67 , HOH B:155 , HOH B:156 , HOH B:157 , HOH B:158 , HOH B:159 , HOH B:160
BINDING SITE FOR RESIDUE MG B 132
06
CC4
SOFTWARE
A B:34 , HOH B:161 , HOH B:162 , HOH B:163 , HOH B:164 , HOH B:165 , HOH B:166
BINDING SITE FOR RESIDUE MG B 133
07
CC5
SOFTWARE
U B:18 , U B:20
BINDING SITE FOR RESIDUE MG B 115
08
CC6
SOFTWARE
A B:78
BINDING SITE FOR RESIDUE MG B 116
09
CC7
SOFTWARE
A B:52
BINDING SITE FOR RESIDUE MG B 119
10
CC8
SOFTWARE
A B:81
BINDING SITE FOR RESIDUE MG B 121
11
CC9
SOFTWARE
G B:17 , U B:20 , A B:21
BINDING SITE FOR RESIDUE MG B 128
12
DC1
SOFTWARE
G B:70 , A B:71
BINDING SITE FOR RESIDUE MG B 129
13
DC2
SOFTWARE
A B:75
BINDING SITE FOR RESIDUE MG B 134
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
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SCOP Domains
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CATH Domains
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Pfam Domains
(0, 0)
Info
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Chain B
Asymmetric Unit 1
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Asym.Unit (168 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
Biol.Unit 3 (161 KB)
Header - Biol.Unit 3
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