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3OXD
Biol. Unit 1
Info
Asym.Unit (168 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH WITH TWO MUTATIONS
Authors
:
L. Huang, A. Serganov, D. J. Patel
Date
:
21 Sep 10 (Deposition) - 29 Dec 10 (Release) - 29 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Gene Expression Regulator, Glycine Riboswitch, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Huang, A. Serganov, D. J. Patel
Structural Insights Into Ligand Recognition By A Sensing Domain Of The Cooperative Glycine Riboswitch.
Mol. Cell V. 40 774 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCa)
1b: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: MAGNESIUM ION (MGa)
3aa: MAGNESIUM ION (MGaa)
3ab: MAGNESIUM ION (MGab)
3ac: MAGNESIUM ION (MGac)
3ad: MAGNESIUM ION (MGad)
3ae: MAGNESIUM ION (MGae)
3af: MAGNESIUM ION (MGaf)
3ag: MAGNESIUM ION (MGag)
3ah: MAGNESIUM ION (MGah)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
3o: MAGNESIUM ION (MGo)
3p: MAGNESIUM ION (MGp)
3q: MAGNESIUM ION (MGq)
3r: MAGNESIUM ION (MGr)
3s: MAGNESIUM ION (MGs)
3t: MAGNESIUM ION (MGt)
3u: MAGNESIUM ION (MGu)
3v: MAGNESIUM ION (MGv)
3w: MAGNESIUM ION (MGw)
3x: MAGNESIUM ION (MGx)
3y: MAGNESIUM ION (MGy)
3z: MAGNESIUM ION (MGz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CCC
1
Mod. Nucleotide
CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2
GDP
1
Mod. Nucleotide
GUANOSINE-5'-DIPHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: DC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:138 , HOH A:139 , HOH A:140 , HOH A:141 , HOH A:142 , HOH A:143
BINDING SITE FOR RESIDUE MG A 101
02
AC2
SOFTWARE
HOH A:146 , HOH A:147 , HOH A:148 , HOH A:149 , HOH A:150 , HOH A:151
BINDING SITE FOR RESIDUE MG A 109
03
AC3
SOFTWARE
A A:21 , HOH A:152 , HOH A:153 , HOH A:154 , HOH A:155 , HOH A:156
BINDING SITE FOR RESIDUE MG A 110
04
AC4
SOFTWARE
HOH A:157 , HOH A:158 , HOH A:159 , HOH A:160 , HOH A:161 , HOH A:162
BINDING SITE FOR RESIDUE MG A 111
05
AC5
SOFTWARE
U A:19 , U A:20 , HOH A:163 , HOH A:164 , HOH A:165 , HOH A:166 , HOH A:167
BINDING SITE FOR RESIDUE MG A 112
06
AC6
SOFTWARE
G A:50 , HOH A:168 , HOH A:169 , HOH A:170 , HOH A:171 , HOH A:172
BINDING SITE FOR RESIDUE MG A 130
07
AC7
SOFTWARE
A A:22 , A A:75
BINDING SITE FOR RESIDUE MG A 103
08
AC8
SOFTWARE
A A:75 , A A:76
BINDING SITE FOR RESIDUE MG A 104
09
AC9
SOFTWARE
G A:10
BINDING SITE FOR RESIDUE MG A 117
10
BC1
SOFTWARE
G A:62
BINDING SITE FOR RESIDUE MG A 118
11
BC2
SOFTWARE
A A:33 , C A:66 , U A:67
BINDING SITE FOR RESIDUE MG A 120
12
BC3
SOFTWARE
G A:8 , G A:80
BINDING SITE FOR RESIDUE MG A 123
13
BC4
SOFTWARE
A A:78 , G A:79 , G A:80
BINDING SITE FOR RESIDUE MG A 124
14
BC5
SOFTWARE
G A:17 , U A:19
BINDING SITE FOR RESIDUE MG A 125
15
BC6
SOFTWARE
A A:41
BINDING SITE FOR RESIDUE MG A 126
16
BC7
SOFTWARE
A A:81
BINDING SITE FOR RESIDUE MG A 137
17
BC8
SOFTWARE
HOH A:144 , HOH A:145 , HOH B:137 , HOH B:138 , HOH B:139 , HOH B:140
BINDING SITE FOR RESIDUE MG B 106
18
DC3
SOFTWARE
U A:20
BINDING SITE FOR RESIDUE MG B 135
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (168 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
Biol.Unit 3 (161 KB)
Header - Biol.Unit 3
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