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Biol. Unit 2
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Asym.Unit (85 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (42 KB)
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(1)
Title
:
STRUCTURAL INSIGHTS INTO CATALYTIC AND SUBSTRATE BINDING MECHANISMS OF THE STRATEGIC ENDA NUCLEASE FROM STREPTOCOCCUS PNEUMONIAE
Authors
:
A. F. Moon, M. Midon, G. Meiss, A. M. Pingoud, R. E. London, L. C. Pedersen
Date
:
20 Sep 10 (Deposition) - 22 Dec 10 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sequence Nonspecific Endonuclease, Hydrolase
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Reference
:
A. F. Moon, M. Midon, G. Meiss, A. Pingoud, R. E. London, L. C. Pedersen
Structural Insights Into Catalytic And Substrate Binding Mechanisms Of The Strategic Enda Nuclease From Streptococcu Pneumoniae.
Nucleic Acids Res. V. 39 2943 2011
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Hetero Components
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1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
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Sites
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2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASN B:191 , HOH B:278 , HOH B:285 , HOH B:292 , HOH B:332 , HOH B:544
BINDING SITE FOR RESIDUE MG B 300
2
AC5
SOFTWARE
LYS B:216 , ARG B:217 , SER B:244 , ASP B:245
BINDING SITE FOR RESIDUE CL B 400
3
AC6
SOFTWARE
GLY B:163 , TYR B:164 , HOH B:544 , HOH B:546
BINDING SITE FOR RESIDUE CL B 401
4
AC7
SOFTWARE
SER B:50 , LEU B:53 , HOH B:313
BINDING SITE FOR RESIDUE CL B 402
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PROSITE Patterns/Profiles
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1: NUCLEASE_NON_SPEC (B:157-165)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUCLEASE_NON_SPEC
PS01070
DNA/RNA non-specific endonucleases active site.
NUCE_STRPN
157-165
1
-
B:157-165
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_Endonuclease_NS_3owvB01 (B:92-264)
1b: PFAM_Endonuclease_NS_3owvB02 (B:92-264)
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Clan
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His-Me_finger
(38)
Family
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Endonuclease_NS
(14)
Streptococcus pneumoniae
(1)
1a
Endonuclease_NS-3owvB01
B:92-264
1b
Endonuclease_NS-3owvB02
B:92-264
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