PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3OW4
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (58 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
DISCOVERY OF DIHYDROTHIENO- AND DIHYDROFUROPYRIMIDINES AS POTENT PAN AKT INHIBITORS
Authors
:
F. Dizon, W. Wu, G. P. A. Vigers, B. J. Brandhuber
Date
:
17 Sep 10 (Deposition) - 10 Nov 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Serine-Threonine Kinase, Transferase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Bencsik, D. Xiao, J. F. Blake, N. C. Kallan, I. S. Mitchell, K. L. Spencer, R. Xu, S. L. Gloor, M. Martinson, T. Risom, R. D. Woessner F. Dizon, W. I. Wu, G. P. Vigers, B. J. Brandhuber, N. J. Skelton, W. W. Prior, L. J. Murray
Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As Potent Pan Akt Inhibitors.
Bioorg. Med. Chem. Lett. V. 20 7037 2010
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: (2R)-3-(1H-INDOL-3-YL)-1-{4-[(5S)-... (SMYa)
1b: (2R)-3-(1H-INDOL-3-YL)-1-{4-[(5S)-... (SMYb)
2a: PHOSPHOTHREONINE (TPOa)
2b: PHOSPHOTHREONINE (TPOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SMY
2
Ligand/Ion
(2R)-3-(1H-INDOL-3-YL)-1-{4-[(5S)-5-METHYL-5,7-DIHYDROTHIENO[3,4-D]PYRIMIDIN-4-YL]PIPERAZIN-1-YL}-1-OXOPROPAN-2-AMINE
2
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:124 , LEU A:156 , GLY A:157 , GLY A:162 , VAL A:164 , GLU A:228 , ALA A:230 , GLU A:234 , MET A:281 , THR A:291 , PHE A:438 , ARG C:4
BINDING SITE FOR RESIDUE SMY A 1
2
AC2
SOFTWARE
LEU B:156 , GLY B:157 , LYS B:158 , GLY B:162 , ALA B:177 , LYS B:179 , GLU B:228 , ALA B:230 , GLU B:234 , THR B:291 , PHE B:438 , ARG D:4
BINDING SITE FOR RESIDUE SMY B 2
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051617 (V167A, chain A/B, )
2: VAR_069792 (T435P, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051617
V
167
A
AKT1_HUMAN
Polymorphism
11555433
A/B
V
167
A
2
UniProt
VAR_069792
T
435
P
AKT1_HUMAN
Unclassified
---
A/B
T
435
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:156-189,B:156-189)
2: PROTEIN_KINASE_ST (A:270-282,B:270-282)
3: AGC_KINASE_CTER (A:409-477,B:409-477)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
AKT1_HUMAN
156-189
2
A:156-189
B:156-189
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
AKT1_HUMAN
270-282
2
A:270-282
B:270-282
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
AKT1_HUMAN
409-480
2
A:409-477
B:409-477
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.1a (C:1-10 | D:1-10)
Exon 2.6 (A:144-145 | B:144-145)
Exon 2.7 (A:146-189 | B:146-189)
Exon 2.8 (A:190-211 | B:190-211)
Exon 2.9 (A:212-234 | B:212-234)
Exon 2.10 (A:235-276 | B:235-276)
Exon 2.11 (A:277-319 | B:277-319)
Exon 2.12 (A:320-391 | B:320-391)
Exon 2.13 (A:391-420 | B:391-420)
Exon 2.14 (A:421-448 | B:421-448)
Exon 2.15 (A:466-478 | B:466-478)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 2.5/2.6
04: Boundary 2.6/2.7
05: Boundary 2.7/2.8
06: Boundary 2.8/2.9
07: Boundary 2.9/2.10
08: Boundary 2.10/2.11
09: Boundary 2.11/2.12
10: Boundary 2.12/2.13
11: Boundary 2.13/2.14
12: Boundary 2.14/2.15
13: Boundary 2.15/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264235
1a
ENSE00001206838
chr3:
119813264-119812194
1071
GSK3B_HUMAN
1-30
30
2
C:1-10
D:1-10
10
10
1.2
ENST00000264235
2
ENSE00001206832
chr3:
119721086-119720893
194
GSK3B_HUMAN
30-94
65
0
-
-
1.3
ENST00000264235
3
ENSE00001076166
chr3:
119666198-119666115
84
GSK3B_HUMAN
95-122
28
0
-
-
1.4
ENST00000264235
4
ENSE00001012216
chr3:
119642330-119642220
111
GSK3B_HUMAN
123-159
37
0
-
-
1.5
ENST00000264235
5
ENSE00001012214
chr3:
119635021-119634891
131
GSK3B_HUMAN
160-203
44
0
-
-
1.6
ENST00000264235
6
ENSE00001012215
chr3:
119631657-119631551
107
GSK3B_HUMAN
203-239
37
0
-
-
1.7
ENST00000264235
7
ENSE00000823656
chr3:
119624699-119624602
98
GSK3B_HUMAN
239-271
33
0
-
-
1.8
ENST00000264235
8
ENSE00001012184
chr3:
119595355-119595260
96
GSK3B_HUMAN
272-303
32
0
-
-
1.10
ENST00000264235
10
ENSE00001012181
chr3:
119582452-119582266
187
GSK3B_HUMAN
304-366
63
0
-
-
1.11b
ENST00000264235
11b
ENSE00001149998
chr3:
119562200-119562102
99
GSK3B_HUMAN
366-399
34
0
-
-
1.12d
ENST00000264235
12d
ENSE00001863284
chr3:
119545702-119540170
5533
GSK3B_HUMAN
399-420
22
0
-
-
2.1
ENST00000349310
1
ENSE00001026413
chr14:
105262080-105261821
260
AKT1_HUMAN
-
0
0
-
-
2.2b
ENST00000349310
2b
ENSE00001184402
chr14:
105259547-105259464
84
AKT1_HUMAN
-
0
0
-
-
2.3
ENST00000349310
3
ENSE00001394660
chr14:
105259059-105258935
125
AKT1_HUMAN
1-16
16
0
-
-
2.4
ENST00000349310
4
ENSE00001026414
chr14:
105246553-105246425
129
AKT1_HUMAN
16-59
44
0
-
-
2.5
ENST00000349310
5
ENSE00001720681
chr14:
105243107-105242996
112
AKT1_HUMAN
59-96
38
0
-
-
2.6
ENST00000349310
6
ENSE00000952908
chr14:
105242136-105241989
148
AKT1_HUMAN
96-145
50
2
A:144-145
B:144-145
2
2
2.7
ENST00000349310
7
ENSE00001680218
chr14:
105241544-105241413
132
AKT1_HUMAN
146-189
44
2
A:146-189
B:146-189
44
44
2.8
ENST00000349310
8
ENSE00000952910
chr14:
105241340-105241275
66
AKT1_HUMAN
190-211
22
2
A:190-211
B:190-211
22
22
2.9
ENST00000349310
9
ENSE00001614411
chr14:
105240317-105240249
69
AKT1_HUMAN
212-234
23
2
A:212-234
B:212-234
23
23
2.10
ENST00000349310
10
ENSE00001296816
chr14:
105239917-105239792
126
AKT1_HUMAN
235-276
42
2
A:235-276
B:235-276
42
42
2.11
ENST00000349310
11
ENSE00001596102
chr14:
105239716-105239588
129
AKT1_HUMAN
277-319
43
2
A:277-319
B:277-319
43
43
2.12
ENST00000349310
12
ENSE00001607654
chr14:
105239429-105239215
215
AKT1_HUMAN
320-391
72
2
A:320-391
B:320-391
72
72
2.13
ENST00000349310
13
ENSE00000952915
chr14:
105238789-105238702
88
AKT1_HUMAN
391-420
30
2
A:391-420
B:391-420
30
30
2.14
ENST00000349310
14
ENSE00000952916
chr14:
105237184-105237082
103
AKT1_HUMAN
421-455
35
2
A:421-448
B:421-448
28
28
2.15
ENST00000349310
15
ENSE00001396509
chr14:
105236757-105235689
1069
AKT1_HUMAN
455-480
26
2
A:466-478
B:466-478
13
13
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ow4a_ (A:)
1b: SCOP_d3ow4b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3ow4a_
A:
1b
d3ow4b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Pkinase_3ow4B01 (B:150-408)
1b: PFAM_Pkinase_3ow4B02 (B:150-408)
2a: PFAM_Pkinase_C_3ow4B03 (B:428-478)
2b: PFAM_Pkinase_C_3ow4B04 (B:428-478)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-3ow4B01
B:150-408
1b
Pkinase-3ow4B02
B:150-408
Clan
:
no clan defined [family: Pkinase_C]
(22)
Family
:
Pkinase_C
(22)
Homo sapiens (Human)
(21)
2a
Pkinase_C-3ow4B03
B:428-478
2b
Pkinase_C-3ow4B04
B:428-478
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (119 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3OW4
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
