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3OW1
Asym. Unit
Info
Asym.Unit (543 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (141 KB)
Biol.Unit 3 (141 KB)
Biol.Unit 4 (140 KB)
Biol.Unit 5 (535 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF D-MANNONATE DEHYDRATASE FROM CHROMOHALOBACTER SALEXIGENS COMPLEXED WITH MG
Authors
:
A. A. Fedorov, E. V. Fedorov, D. Wichelecki, J. A. Gerlt, S. C. Almo
Date
:
17 Sep 10 (Deposition) - 28 Sep 11 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Keywords
:
D-Mannonate Dehydratase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, D. Wichelecki, J. A. Gerlt, S. C. Almo
Crystal Structure Of D-Mannonate Dehydratase From Chromohalobacter Salexigens Complexed With Mg
To Be Published
[
close entry info
]
Hetero Components
(3, 34)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
11
Ligand/Ion
GLYCEROL
2
MG
8
Ligand/Ion
MAGNESIUM ION
3
SO4
15
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:213 , GLU A:239 , GLU A:265 , HOH A:441 , HOH A:2093 , HOH A:2097
BINDING SITE FOR RESIDUE MG A 406
02
AC2
SOFTWARE
ASP B:213 , GLU B:239 , GLU B:265 , ARG B:286 , HOH B:627 , HOH B:2134 , HOH B:2142
BINDING SITE FOR RESIDUE MG B 406
03
AC3
SOFTWARE
ASP C:213 , GLU C:239 , GLU C:265 , HOH C:684 , HOH C:1608 , HOH C:2096
BINDING SITE FOR RESIDUE MG C 406
04
AC4
SOFTWARE
ASP D:213 , GLU D:239 , GLU D:265 , HOH D:2099 , HOH D:2131 , HOH D:2138
BINDING SITE FOR RESIDUE MG D 406
05
AC5
SOFTWARE
ASP E:213 , GLU E:239 , GLU E:265 , HOH E:2128 , HOH E:2140 , HOH E:2151
BINDING SITE FOR RESIDUE MG E 406
06
AC6
SOFTWARE
ASP F:213 , GLU F:239 , GLU F:265 , HOH F:1622 , HOH F:2088 , HOH F:2157
BINDING SITE FOR RESIDUE MG F 406
07
AC7
SOFTWARE
ASP G:213 , GLU G:239 , GLU G:265 , ARG G:286 , HOH G:440 , HOH G:1610 , HOH G:2098
BINDING SITE FOR RESIDUE MG G 406
08
AC8
SOFTWARE
ASP H:213 , GLU H:239 , GLU H:265 , HOH H:2087 , HOH H:2091 , HOH H:2129
BINDING SITE FOR RESIDUE MG H 406
09
AC9
SOFTWARE
ASN A:39 , HIS A:215 , HIS A:315 , PRO A:317 , ASP A:319 , TRP A:405 , HOH A:441 , TRP B:78
BINDING SITE FOR RESIDUE GOL A 407
10
BC1
SOFTWARE
TYR A:77 , TRP A:78 , ASN B:39 , HIS B:215 , GLU B:265 , HIS B:315 , PRO B:317 , ASP B:319 , TRP B:405 , HOH B:627
BINDING SITE FOR RESIDUE GOL B 407
11
BC2
SOFTWARE
ASN C:39 , HIS C:215 , HIS C:315 , PRO C:317 , ASP C:319 , TRP C:405 , HOH C:684 , TRP D:78
BINDING SITE FOR RESIDUE GOL C 407
12
BC3
SOFTWARE
TRP C:78 , ASN D:39 , HIS D:215 , HIS D:315 , PRO D:317 , ASP D:319 , TRP D:405 , HOH D:2138
BINDING SITE FOR RESIDUE GOL D 407
13
BC4
SOFTWARE
ASN E:39 , HIS E:215 , GLU E:265 , HIS E:315 , PRO E:317 , ASP E:319 , TRP E:405 , HOH E:2151 , TYR F:77 , TRP F:78
BINDING SITE FOR RESIDUE GOL E 407
14
BC5
SOFTWARE
TRP E:78 , ASN F:39 , PRO F:173 , HIS F:215 , HIS F:315 , PRO F:317 , ASP F:319 , TRP F:405 , HOH F:2157
BINDING SITE FOR RESIDUE GOL F 407
15
BC6
SOFTWARE
ASN G:39 , HIS G:215 , HIS G:315 , PRO G:317 , ASP G:319 , TRP G:405 , HOH G:440 , TYR H:77 , TRP H:78
BINDING SITE FOR RESIDUE GOL G 407
16
BC7
SOFTWARE
TRP G:78 , ASN H:39 , HIS H:215 , GLU H:265 , HIS H:315 , PRO H:317 , ASP H:319 , TRP H:405
BINDING SITE FOR RESIDUE GOL H 407
17
BC8
SOFTWARE
ALA C:352 , LEU C:381 , TYR C:385 , HOH C:986 , HOH C:1863
BINDING SITE FOR RESIDUE GOL C 408
18
BC9
SOFTWARE
ASP H:357 , GLU H:369 , SER H:370 , HOH H:1059
BINDING SITE FOR RESIDUE GOL H 408
19
CC1
SOFTWARE
PRO A:393 , SO4 A:410 , HOH A:1348
BINDING SITE FOR RESIDUE GOL A 408
20
CC2
SOFTWARE
THR A:129 , ILE A:130 , HIS A:192 , HOH A:487 , HOH A:1258
BINDING SITE FOR RESIDUE SO4 A 409
21
CC3
SOFTWARE
THR C:129 , ILE C:130 , HIS C:192 , HOH C:937 , HOH C:1293
BINDING SITE FOR RESIDUE SO4 C 409
22
CC4
SOFTWARE
THR D:129 , ILE D:130 , HIS D:192 , HOH D:664 , HOH D:1266
BINDING SITE FOR RESIDUE SO4 D 408
23
CC5
SOFTWARE
THR E:129 , ILE E:130 , HIS E:192 , HOH E:825 , HOH E:852
BINDING SITE FOR RESIDUE SO4 E 408
24
CC6
SOFTWARE
THR G:129 , ILE G:130 , HIS G:192 , HOH G:1236
BINDING SITE FOR RESIDUE SO4 G 408
25
CC7
SOFTWARE
THR H:129 , ILE H:130 , HIS H:192 , HOH H:583 , HOH H:1687
BINDING SITE FOR RESIDUE SO4 H 409
26
CC8
SOFTWARE
ARG C:17 , PRO C:173 , THR C:318 , HOH C:739 , HOH C:767 , HOH C:1629
BINDING SITE FOR RESIDUE SO4 C 410
27
CC9
SOFTWARE
ARG D:17 , PRO D:173 , THR D:318 , HOH D:477 , HOH D:1079 , HOH D:1662
BINDING SITE FOR RESIDUE SO4 D 409
28
DC1
SOFTWARE
ARG G:17 , THR G:318 , HOH G:989 , HOH G:1645 , HOH G:1670
BINDING SITE FOR RESIDUE SO4 G 409
29
DC2
SOFTWARE
THR F:129 , ILE F:130 , HIS F:192 , HOH F:960 , HOH F:1063
BINDING SITE FOR RESIDUE SO4 F 408
30
DC3
SOFTWARE
ARG A:17 , THR A:318 , GOL A:408 , HOH A:839 , HOH A:1439 , HOH A:1649
BINDING SITE FOR RESIDUE SO4 A 410
31
DC4
SOFTWARE
ARG F:17 , PRO F:173 , THR F:318 , HOH F:617 , HOH F:1046 , HOH F:1650
BINDING SITE FOR RESIDUE SO4 F 409
32
DC5
SOFTWARE
THR B:129 , ILE B:130 , HIS B:192 , HOH B:1047 , HOH B:1099
BINDING SITE FOR RESIDUE SO4 B 408
33
DC6
SOFTWARE
ARG G:139 , HIS G:140 , PRO G:345 , HOH G:1265
BINDING SITE FOR RESIDUE SO4 G 410
34
DC7
SOFTWARE
ARG H:17 , PRO H:173 , THR H:318 , HOH H:543 , HOH H:691 , HOH H:783
BINDING SITE FOR RESIDUE SO4 H 410
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: MR_MLE_1 (A:87-112,B:87-112,C:87-112,D:87-11...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MR_MLE_1
PS00908
Mandelate racemase / muconate lactonizing enzyme family signature 1.
DMGD_CHRSD
85-110
8
A:87-112
B:87-112
C:87-112
D:87-112
E:87-112
F:87-112
G:87-112
H:87-112
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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