PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3OV3
Biol. Unit 1
Info
Asym.Unit (514 KB)
Biol.Unit 1 (257 KB)
Biol.Unit 2 (257 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
G211F MUTANT OF CURCUMIN SYNTHASE 1 FROM CURCUMA LONGA
Authors
:
Y. Katsuyama, K. Miyazono, M. Tanokura, Y. Ohnishi, S. Horinouchi
Date
:
15 Sep 10 (Deposition) - 08 Dec 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Type Iii Polyketide Synthase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Katsuyama, K. Miyazono, M. Tanokura, Y. Ohnishi, S. Horinouchi
A Hydrophobic Cavity Discovered In A Curcumin Synthase Facilitates Utilization Of A Beta-Keto Acid As An Extender Substrate For The Atypical Type Iii Polyleteide Synthase
To Be Published
[
close entry info
]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: MALONATE ION (MLIa)
1b: MALONATE ION (MLIb)
1c: MALONATE ION (MLIc)
1d: MALONATE ION (MLId)
1e: MALONATE ION (MLIe)
1f: MALONATE ION (MLIf)
1g: MALONATE ION (MLIg)
1h: MALONATE ION (MLIh)
1i: MALONATE ION (MLIi)
1j: MALONATE ION (MLIj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLI
5
Ligand/Ion
MALONATE ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:249 , SER A:250 , GLN A:251 , GLY A:252 , ALA A:253 , LYS C:54
BINDING SITE FOR RESIDUE MLI A 394
2
AC2
SOFTWARE
THR A:24 , THR A:26 , TYR A:334
BINDING SITE FOR RESIDUE MLI A 395
3
AC5
SOFTWARE
ILE A:132 , SER A:133 , ILE A:193 , THR A:194 , VAL A:195 , LEU A:196 , SER A:197 , TRP A:263 , GLN A:338 , HOH A:439
BINDING SITE FOR RESIDUE MLI A 396
4
AC8
SOFTWARE
ILE A:274 , ASP A:277 , GLN C:50 , GLU C:51 , LYS C:54 , HOH C:434
BINDING SITE FOR RESIDUE MLI A 397
5
AC9
SOFTWARE
ASP A:48 , GLN A:50 , ILE B:114 , LYS B:115 , GLY B:118 , ARG B:119
BINDING SITE FOR RESIDUE MLI A 398
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3ov3a1 (A:5-235)
1b: SCOP_d3ov3b1 (B:3-235)
1c: SCOP_d3ov3b2 (B:236-391)
1d: SCOP_d3ov3c1 (C:3-235)
1e: SCOP_d3ov3c2 (C:236-393)
1f: SCOP_d3ov3d1 (D:3-235)
1g: SCOP_d3ov3d2 (D:236-391)
1h: SCOP_d3ov3a2 (A:236-391)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Curcuma longa [TaxId: 136217]
(2)
1a
d3ov3a1
A:5-235
1b
d3ov3b1
B:3-235
1c
d3ov3b2
B:236-391
1d
d3ov3c1
C:3-235
1e
d3ov3c2
C:236-393
1f
d3ov3d1
D:3-235
1g
d3ov3d2
D:236-391
1h
d3ov3a2
A:236-391
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (514 KB)
Header - Asym.Unit
Biol.Unit 1 (257 KB)
Header - Biol.Unit 1
Biol.Unit 2 (257 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3OV3
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help