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3OV2
Asym. Unit
Info
Asym.Unit (527 KB)
Biol.Unit 1 (264 KB)
Biol.Unit 2 (262 KB)
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(1)
Title
:
CURCUMIN SYNTHASE 1 FROM CURCUMA LONGA
Authors
:
Y. Katsuyama, K. Miyazono, M. Tanokura, Y. Ohnishi, S. Horinouchi
Date
:
15 Sep 10 (Deposition) - 08 Dec 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.32
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Type Iii Polyketide Synthase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Katsuyama, K. Miyazono, M. Tanokura, Y. Ohnishi, S. Horinouchi
A Hydrophobic Cavity Discovered In A Curcumin Synthase Facilitates Utilization Of A Beta-Keto Acid As An Extender Substrate For The Atypical Type Iii Polyleteide Synthase
To Be Published
[
close entry info
]
Hetero Components
(2, 77)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1an: 1,2-ETHANEDIOL (EDOan)
1ao: 1,2-ETHANEDIOL (EDOao)
1ap: 1,2-ETHANEDIOL (EDOap)
1aq: 1,2-ETHANEDIOL (EDOaq)
1ar: 1,2-ETHANEDIOL (EDOar)
1as: 1,2-ETHANEDIOL (EDOas)
1at: 1,2-ETHANEDIOL (EDOat)
1au: 1,2-ETHANEDIOL (EDOau)
1av: 1,2-ETHANEDIOL (EDOav)
1aw: 1,2-ETHANEDIOL (EDOaw)
1ax: 1,2-ETHANEDIOL (EDOax)
1ay: 1,2-ETHANEDIOL (EDOay)
1az: 1,2-ETHANEDIOL (EDOaz)
1b: 1,2-ETHANEDIOL (EDOb)
1ba: 1,2-ETHANEDIOL (EDOba)
1bb: 1,2-ETHANEDIOL (EDObb)
1bc: 1,2-ETHANEDIOL (EDObc)
1bd: 1,2-ETHANEDIOL (EDObd)
1be: 1,2-ETHANEDIOL (EDObe)
1bf: 1,2-ETHANEDIOL (EDObf)
1bg: 1,2-ETHANEDIOL (EDObg)
1bh: 1,2-ETHANEDIOL (EDObh)
1bi: 1,2-ETHANEDIOL (EDObi)
1bj: 1,2-ETHANEDIOL (EDObj)
1bk: 1,2-ETHANEDIOL (EDObk)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: MALONATE ION (MLIa)
2b: MALONATE ION (MLIb)
2c: MALONATE ION (MLIc)
2d: MALONATE ION (MLId)
2e: MALONATE ION (MLIe)
2f: MALONATE ION (MLIf)
2g: MALONATE ION (MLIg)
2h: MALONATE ION (MLIh)
2i: MALONATE ION (MLIi)
2j: MALONATE ION (MLIj)
2k: MALONATE ION (MLIk)
2l: MALONATE ION (MLIl)
2m: MALONATE ION (MLIm)
2n: MALONATE ION (MLIn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
63
Ligand/Ion
1,2-ETHANEDIOL
2
MLI
14
Ligand/Ion
MALONATE ION
[
close Hetero Component info
]
Sites
(77, 77)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:164 , HIS A:303 , ASN A:336 , PHE A:373 , GLY A:374 , HOH A:480
BINDING SITE FOR RESIDUE MLI A 394
02
AC2
SOFTWARE
ILE D:132 , SER D:133 , ILE D:193 , THR D:194 , VAL D:195 , LEU D:196 , SER D:197 , PHE D:265 , GLN D:338 , HOH D:534
BINDING SITE FOR RESIDUE MLI D 394
03
AC3
SOFTWARE
THR A:24 , TYR A:334 , PHE A:344 , ASP A:347 , GLU A:348
BINDING SITE FOR RESIDUE MLI A 395
04
AC4
SOFTWARE
THR C:246 , ALA D:145 , THR D:146 , LEU D:150 , PRO D:151 , LEU D:152 , VAL D:154 , ARG D:156
BINDING SITE FOR RESIDUE MLI D 395
05
AC5
SOFTWARE
CYS B:164 , LEU B:271 , HIS B:303 , GLY B:305 , ASN B:336 , PHE B:373 , MLI B:396
BINDING SITE FOR RESIDUE MLI B 394
06
AC6
SOFTWARE
CYS D:164 , LEU D:271 , ASN D:336 , EDO D:402 , HOH D:494
BINDING SITE FOR RESIDUE MLI D 396
07
AC7
SOFTWARE
PRO B:27 , PRO B:28 , HIS B:71 , GLU B:101 , HOH B:483
BINDING SITE FOR RESIDUE MLI B 395
08
AC8
SOFTWARE
ASP A:141 , ARG A:156 , LEU A:157 , MET A:158 , GLN B:162 , HIS B:165 , MET B:166 , ALA B:169 , ARG B:172 , GLN B:244 , GLU B:380
BINDING SITE FOR RESIDUE MLI A 396
09
AC9
SOFTWARE
GLY B:214 , GLY B:305 , ASN B:306 , ASN B:336 , MLI B:394 , HOH B:532
BINDING SITE FOR RESIDUE MLI B 396
10
BC1
SOFTWARE
ALA A:145 , THR A:146 , LEU A:150 , PRO A:151 , LEU A:152 , ARG A:156 , THR B:246
BINDING SITE FOR RESIDUE MLI A 397
11
BC2
SOFTWARE
GLY B:252 , LYS D:107 , LEU D:147 , HOH D:417
BINDING SITE FOR RESIDUE MLI D 397
12
BC3
SOFTWARE
MET A:243 , GLN A:244 , ARG A:285 , THR B:153 , ASN B:155
BINDING SITE FOR RESIDUE MLI B 397
13
BC4
SOFTWARE
ILE A:132 , SER A:133 , ILE A:193 , THR A:194 , VAL A:195 , LEU A:196 , SER A:197 , TRP A:263 , PHE A:265 , GLN A:338 , HOH A:461
BINDING SITE FOR RESIDUE MLI A 398
14
BC5
SOFTWARE
CYS C:164 , ASN C:336 , PHE C:373 , GLY C:374 , EDO C:401 , HOH C:443
BINDING SITE FOR RESIDUE MLI C 394
15
BC6
SOFTWARE
ARG B:119 , GLY B:183 , HOH B:476
BINDING SITE FOR RESIDUE EDO B 398
16
BC7
SOFTWARE
ALA B:145 , THR B:146 , LEU B:150 , PRO B:151
BINDING SITE FOR RESIDUE EDO B 399
17
BC8
SOFTWARE
LEU A:258 , ARG A:259 , EDO A:412 , GLN B:95 , HOH B:490
BINDING SITE FOR RESIDUE EDO A 399
18
BC9
SOFTWARE
LEU B:30 , TYR B:31 , GLU B:32 , THR B:35 , PHE B:36
BINDING SITE FOR RESIDUE EDO B 400
19
CC1
SOFTWARE
THR B:24 , PHE B:344 , ASP B:347 , GLU B:348 , HOH B:525
BINDING SITE FOR RESIDUE EDO B 401
20
CC2
SOFTWARE
TYR C:31 , GLU C:32 , THR C:35 , PHE C:36
BINDING SITE FOR RESIDUE EDO C 395
21
CC3
SOFTWARE
GLU A:207 , GLY A:252 , TYR A:266 , HOH A:475
BINDING SITE FOR RESIDUE EDO A 400
22
CC4
SOFTWARE
ASP A:297 , LEU A:365 , GLN A:366 , TRP A:367
BINDING SITE FOR RESIDUE EDO A 401
23
CC5
SOFTWARE
THR D:24 , PHE D:344 , ASP D:347 , GLU D:348
BINDING SITE FOR RESIDUE EDO D 398
24
CC6
SOFTWARE
ASP B:277
BINDING SITE FOR RESIDUE EDO B 402
25
CC7
SOFTWARE
HIS A:126 , ASN A:155 , ARG A:156 , LEU A:157 , LEU A:177 , HOH A:433 , ARG B:172
BINDING SITE FOR RESIDUE EDO A 402
26
CC8
SOFTWARE
ASP D:322 , SER D:325 , THR D:326 , ARG D:352 , ASP D:363
BINDING SITE FOR RESIDUE EDO D 399
27
CC9
SOFTWARE
ASP B:297 , GLN B:366 , TRP B:367
BINDING SITE FOR RESIDUE EDO B 403
28
DC1
SOFTWARE
GLU C:249 , GLN C:251 , GLY C:252
BINDING SITE FOR RESIDUE EDO C 396
29
DC2
SOFTWARE
TRP A:307 , ASP A:311
BINDING SITE FOR RESIDUE EDO A 403
30
DC3
SOFTWARE
ASP C:92 , ARG D:259 , PHE D:261
BINDING SITE FOR RESIDUE EDO D 400
31
DC4
SOFTWARE
ASN D:269 , GLN D:270 , HOH D:433
BINDING SITE FOR RESIDUE EDO D 401
32
DC5
SOFTWARE
THR B:194 , SER B:197 , GLY B:211 , GLN B:212 , PHE B:215
BINDING SITE FOR RESIDUE EDO B 404
33
DC6
SOFTWARE
TRP C:307 , ASP C:311
BINDING SITE FOR RESIDUE EDO C 397
34
DC7
SOFTWARE
GLY C:139 , ASP C:141 , ARG C:156 , GLN D:162 , ALA D:163 , HIS D:165 , PRO D:375 , EDO D:410
BINDING SITE FOR RESIDUE EDO C 398
35
DC8
SOFTWARE
GLN C:33 , CYS C:60 , GLU C:61 , HOH C:553
BINDING SITE FOR RESIDUE EDO C 399
36
DC9
SOFTWARE
GLU C:32 , GLN C:33 , SER C:34 , LYS C:66
BINDING SITE FOR RESIDUE EDO C 400
37
EC1
SOFTWARE
GLY D:305 , ASN D:306 , MLI D:396
BINDING SITE FOR RESIDUE EDO D 402
38
EC2
SOFTWARE
GLY C:305 , ASN C:306 , MLI C:394 , HOH C:453
BINDING SITE FOR RESIDUE EDO C 401
39
EC3
SOFTWARE
LYS A:53 , LYS A:54 , ARG A:57 , HOH A:526
BINDING SITE FOR RESIDUE EDO A 404
40
EC4
SOFTWARE
GLU B:356 , SER D:325
BINDING SITE FOR RESIDUE EDO B 405
41
EC5
SOFTWARE
ARG B:182 , GLY B:183 , ASP B:227
BINDING SITE FOR RESIDUE EDO B 406
42
EC6
SOFTWARE
ALA C:145 , LEU C:150 , PRO C:151 , LEU C:152 , ARG C:156 , HOH C:516 , THR D:246
BINDING SITE FOR RESIDUE EDO C 402
43
EC7
SOFTWARE
HIS C:126 , ASN C:155 , LEU C:157 , LEU C:177 , ARG D:172 , HOH D:515
BINDING SITE FOR RESIDUE EDO C 403
44
EC8
SOFTWARE
LYS A:234 , PRO A:235 , THR A:361 , HOH A:435 , HOH A:524
BINDING SITE FOR RESIDUE EDO A 405
45
EC9
SOFTWARE
ARG D:182 , GLY D:183 , ALA D:184
BINDING SITE FOR RESIDUE EDO D 403
46
FC1
SOFTWARE
GLU B:88 , ALA B:89
BINDING SITE FOR RESIDUE EDO B 407
47
FC2
SOFTWARE
GLN A:95 , ILE A:132 , GLY A:134 , ILE A:135 , SER A:161 , TRP A:263
BINDING SITE FOR RESIDUE EDO A 406
48
FC3
SOFTWARE
GLN B:95 , ILE B:132 , GLY B:134 , ILE B:135 , SER B:161 , LEU B:196 , TRP B:263
BINDING SITE FOR RESIDUE EDO B 408
49
FC4
SOFTWARE
GLN D:95 , ILE D:132 , SER D:133 , GLY D:134 , ILE D:135 , SER D:161 , LEU D:196 , TRP D:263
BINDING SITE FOR RESIDUE EDO D 404
50
FC5
SOFTWARE
HIS D:71 , ILE D:97 , GLU D:101 , EDO D:406
BINDING SITE FOR RESIDUE EDO D 405
51
FC6
SOFTWARE
SER B:133 , ILE B:193 , THR B:194 , VAL B:195 , LEU B:196 , SER B:197 , GLN B:338 , HOH B:491
BINDING SITE FOR RESIDUE EDO B 409
52
FC7
SOFTWARE
ARG C:80 , PRO C:81 , LYS C:82 , ASP C:93
BINDING SITE FOR RESIDUE EDO C 404
53
FC8
SOFTWARE
SER A:197 , ARG A:199 , GLN A:212 , TRP A:263 , THR A:264 , PHE A:265 , HOH A:459
BINDING SITE FOR RESIDUE EDO A 407
54
FC9
SOFTWARE
ASP A:277 , HOH A:481 , GLN C:50 , GLU C:51
BINDING SITE FOR RESIDUE EDO A 408
55
GC1
SOFTWARE
GLU B:123
BINDING SITE FOR RESIDUE EDO B 410
56
GC2
SOFTWARE
ASP A:48 , GLN A:50 , ILE B:114 , GLY B:118 , ARG B:119 , HOH B:455
BINDING SITE FOR RESIDUE EDO B 411
57
GC3
SOFTWARE
GLU A:249 , SER A:250 , GLN A:251 , GLY A:252 , ALA A:253 , LYS C:54
BINDING SITE FOR RESIDUE EDO A 409
58
GC4
SOFTWARE
GLN C:95 , ILE C:132 , SER C:133 , GLY C:134 , ILE C:135 , SER C:161 , LEU C:196 , TRP C:263
BINDING SITE FOR RESIDUE EDO C 405
59
GC5
SOFTWARE
ARG A:172 , HIS B:126 , LEU B:127 , ASN B:155 , ARG B:156 , LEU B:157 , LEU B:177 , HOH B:459
BINDING SITE FOR RESIDUE EDO B 412
60
GC6
SOFTWARE
GLN A:162 , HIS A:165 , MET A:166 , GLN A:244 , ASP B:141 , ARG B:156 , LEU B:157 , MET B:158
BINDING SITE FOR RESIDUE EDO A 410
61
GC7
SOFTWARE
GLU B:203 , ILE D:76 , GLU D:79 , ARG D:80 , EDO D:405
BINDING SITE FOR RESIDUE EDO D 406
62
GC8
SOFTWARE
LEU A:30 , TYR A:31 , GLU A:32 , THR A:35 , PHE A:36
BINDING SITE FOR RESIDUE EDO A 411
63
GC9
SOFTWARE
LEU D:30 , TYR D:31 , GLU D:32 , THR D:35 , PHE D:39 , HOH D:504
BINDING SITE FOR RESIDUE EDO D 407
64
HC1
SOFTWARE
LYS B:55 , PHE B:206 , GLU D:79
BINDING SITE FOR RESIDUE EDO B 413
65
HC2
SOFTWARE
HIS A:257 , EDO A:399 , ASP B:136
BINDING SITE FOR RESIDUE EDO A 412
66
HC3
SOFTWARE
SER D:197 , ARG D:199 , GLN D:212 , TRP D:263 , THR D:264 , PHE D:265
BINDING SITE FOR RESIDUE EDO D 408
67
HC4
SOFTWARE
GLY D:183 , ASP D:227 , LEU D:229
BINDING SITE FOR RESIDUE EDO D 409
68
HC5
SOFTWARE
GLU A:79 , VAL C:247 , ALA C:248 , GLU C:249
BINDING SITE FOR RESIDUE EDO C 406
69
HC6
SOFTWARE
THR A:194 , SER A:197 , GLY A:211 , GLN A:212
BINDING SITE FOR RESIDUE EDO A 413
70
HC7
SOFTWARE
GLU A:294 , TRP A:295 , ASN A:296 , LEU A:317
BINDING SITE FOR RESIDUE EDO A 414
71
HC8
SOFTWARE
LYS A:175 , ALA A:241 , ALA A:242
BINDING SITE FOR RESIDUE EDO A 415
72
HC9
SOFTWARE
ASP C:141 , ARG C:156 , MET C:158 , EDO C:398 , GLN D:162 , HIS D:165 , GLN D:244
BINDING SITE FOR RESIDUE EDO D 410
73
IC1
SOFTWARE
LYS A:112 , LYS A:115 , HOH A:509
BINDING SITE FOR RESIDUE EDO A 416
74
IC2
SOFTWARE
ASP D:297 , LEU D:365 , GLN D:366 , TRP D:367
BINDING SITE FOR RESIDUE EDO D 411
75
IC3
SOFTWARE
ALA A:248 , ILE A:274 , LYS C:54
BINDING SITE FOR RESIDUE EDO A 417
76
IC4
SOFTWARE
GLU C:207 , GLY C:252 , PHE C:267 , HOH C:550
BINDING SITE FOR RESIDUE EDO C 407
77
IC5
SOFTWARE
SER B:197 , ARG B:199 , ALA B:208 , TRP B:263 , THR B:264 , PHE B:265
BINDING SITE FOR RESIDUE EDO B 414
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3ov2a1 (A:3-235)
1b: SCOP_d3ov2a2 (A:236-391)
1c: SCOP_d3ov2b1 (B:3-235)
1d: SCOP_d3ov2b2 (B:236-391)
1e: SCOP_d3ov2c1 (C:2-235)
1f: SCOP_d3ov2c2 (C:236-393)
1g: SCOP_d3ov2d1 (D:3-235)
1h: SCOP_d3ov2d2 (D:236-391)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Curcuma longa [TaxId: 136217]
(2)
1a
d3ov2a1
A:3-235
1b
d3ov2a2
A:236-391
1c
d3ov2b1
B:3-235
1d
d3ov2b2
B:236-391
1e
d3ov2c1
C:2-235
1f
d3ov2c2
C:236-393
1g
d3ov2d1
D:3-235
1h
d3ov2d2
D:236-391
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Show PDB file:
Asym.Unit (527 KB)
Header - Asym.Unit
Biol.Unit 1 (264 KB)
Header - Biol.Unit 1
Biol.Unit 2 (262 KB)
Header - Biol.Unit 2
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