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3OV1
Asym. Unit
Info
Asym.Unit (28 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GRB2 SH2 DOMAIN IN COMPLEX WITH A PYXN-DERIVED TRIPEPTIDE
Authors
:
J. H. Clements, S. F. Martin
Date
:
15 Sep 10 (Deposition) - 02 Nov 11 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Grb2 Sh2 Domain, Phosphotyrosine Binding, Signaling Protein, Signaling Protein-Antagonist Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Myslinski, J. E. Delorbe, J. H. Clements, S. F. Martin
Protein-Ligand Interactions: Thermodynamic Effects Associated With Increasing Nonpolar Surface Area.
J. Am. Chem. Soc. V. 133 18518 2011
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Hetero Components
(7, 8)
Info
All Hetero Components
1a: 1-AMINOCYCLOPROPANECARBOXYLIC ACID (1ACa)
2a: ACETATE ION (ACTa)
3a: FORMIC ACID (FMTa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: SODIUM ION (NAa)
6a: AMINO GROUP (NH2a)
7a: O-PHOSPHOTYROSINE (PTRa)
View:
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No.
Name
Count
Type
Full Name
1
1AC
1
Mod. Amino Acid
1-AMINOCYCLOPROPANECARBOXYLIC ACID
2
ACT
1
Mod. Amino Acid
ACETATE ION
3
FMT
1
Ligand/Ion
FORMIC ACID
4
GOL
2
Ligand/Ion
GLYCEROL
5
NA
1
Ligand/Ion
SODIUM ION
6
NH2
1
Mod. Amino Acid
AMINO GROUP
7
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:75 , GLN A:77 , ARG A:78 , ASP A:94 , LYS A:100 , LEU A:111 , ARG A:112 , HOH A:192 , HOH A:197 , HOH A:201
BINDING SITE FOR RESIDUE GOL A 174
2
AC2
SOFTWARE
HOH A:35 , ASP A:113 , TRP A:121 , LYS A:124 , HIS A:135 , THR A:138 , SER A:139 , SER A:141 , ARG A:142 , HOH A:204 , HOH A:233
BINDING SITE FOR RESIDUE GOL A 6
3
AC3
SOFTWARE
HOH A:19 , GLN A:77 , ARG A:78 , HIS A:79 , LYS A:109 , GLU A:152 , HOH A:208
BINDING SITE FOR RESIDUE FMT A 7
4
AC4
SOFTWARE
ASP A:94 , PHE A:95 , VAL A:110 , HOH A:203
BINDING SITE FOR RESIDUE NA A 8
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SH3 (-|A:156-156)
2: SH2 (A:60-152)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
GRB2_HUMAN
1-58
156-215
1
-
A:156-156
2
SH2
PS50001
Src homology 2 (SH2) domain profile.
GRB2_HUMAN
60-152
1
A:60-152
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Exons
(3, 3)
Info
All Exons
Exon 1.4 (A:55-59)
Exon 1.6 (A:59-100)
Exon 1.7 (A:100-156)
View:
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All Exon Boundaries
1: Boundary 1.3a/1.4
2: Boundary 1.4/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8b
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000392564
3a
ENSE00001512384
chr17:
73389945-73389632
314
GRB2_HUMAN
1-26
26
0
-
-
1.4
ENST00000392564
4
ENSE00000387085
chr17:
73328878-73328781
98
GRB2_HUMAN
27-59
33
1
A:55-59
5
1.6
ENST00000392564
6
ENSE00000855724
chr17:
73322101-73321979
123
GRB2_HUMAN
59-100
42
1
A:59-100
42
1.7
ENST00000392564
7
ENSE00000744359
chr17:
73317908-73317740
169
GRB2_HUMAN
100-156
57
1
A:100-156
57
1.8b
ENST00000392564
8b
ENSE00001512383
chr17:
73316634-73314157
2478
GRB2_HUMAN
157-217
61
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ov1a_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Growth factor receptor-bound protein 2 (GRB2)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d3ov1a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (28 KB)
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