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3OUU
Asym. Unit
Info
Asym.Unit (318 KB)
Biol.Unit 1 (309 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE-BETA-GAMMA-ATP COMPLEX FROM CAMPYLOBACTER JEJUNI
Authors
:
N. Maltseva, Y. Kim, M. Makowska-Grzyska, R. Mulligan, L. Papazisi, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
15 Sep 10 (Deposition) - 20 Oct 10 (Release) - 20 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha - Beta Fold, Carboxylase, Cytosol, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Maltseva, Y. Kim, M. Makowska-Grzyska, R. Mulligan, L. Papazisi, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni
To Be Published
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Hetero Components
(6, 49)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
3a: CACODYLATE ION (CACa)
3b: CACODYLATE ION (CACb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
4a: FORMIC ACID (FMTa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
6a: SELENOMETHIONINE (MSEa)
6aa: SELENOMETHIONINE (MSEaa)
6ab: SELENOMETHIONINE (MSEab)
6ac: SELENOMETHIONINE (MSEac)
6ad: SELENOMETHIONINE (MSEad)
6ae: SELENOMETHIONINE (MSEae)
6af: SELENOMETHIONINE (MSEaf)
6ag: SELENOMETHIONINE (MSEag)
6ah: SELENOMETHIONINE (MSEah)
6ai: SELENOMETHIONINE (MSEai)
6aj: SELENOMETHIONINE (MSEaj)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
6y: SELENOMETHIONINE (MSEy)
6z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
CA
4
Ligand/Ion
CALCIUM ION
3
CAC
2
Ligand/Ion
CACODYLATE ION
4
FMT
1
Ligand/Ion
FORMIC ACID
5
GOL
4
Ligand/Ion
GLYCEROL
6
MSE
36
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:33 , LYS A:38
BINDING SITE FOR RESIDUE GOL A 452
02
AC2
SOFTWARE
TRP A:183 , SER A:184 , HOH A:572 , HOH A:612 , PHE B:347 , PRO B:349
BINDING SITE FOR RESIDUE GOL A 457
03
AC3
SOFTWARE
GLU A:289 , ASN A:291 , ANP A:460 , HOH A:588
BINDING SITE FOR RESIDUE CA A 458
04
AC4
SOFTWARE
GLU A:276 , GLU A:289 , ANP A:460 , HOH A:478
BINDING SITE FOR RESIDUE CA A 459
05
AC5
SOFTWARE
LYS A:117 , ILE A:132 , ILE A:157 , LYS A:159 , GLY A:164 , GLY A:165 , GLY A:166 , MSE A:169 , GLU A:201 , LYS A:202 , TYR A:203 , ILE A:204 , HIS A:209 , GLN A:233 , HIS A:236 , GLU A:276 , LEU A:278 , GLU A:289 , THR A:437 , CA A:458 , CA A:459 , HOH A:531 , HOH A:603 , HOH A:715
BINDING SITE FOR RESIDUE ANP A 460
06
AC6
SOFTWARE
MSE A:114 , SER A:115 , LYS A:117 , ALA A:161 , ALA A:162 , GLY A:163 , HOH A:533 , HOH A:561 , HOH A:588 , HOH A:730 , HOH A:732
BINDING SITE FOR RESIDUE CAC A 461
07
AC7
SOFTWARE
ASP A:39 , TYR A:372 , HOH A:648 , LYS B:356 , ILE B:358
BINDING SITE FOR RESIDUE GOL B 453
08
AC8
SOFTWARE
LYS B:38 , HOH B:570
BINDING SITE FOR RESIDUE GOL B 454
09
AC9
SOFTWARE
GLU B:276 , GLU B:289 , ANP B:457 , HOH B:610
BINDING SITE FOR RESIDUE CA B 455
10
BC1
SOFTWARE
GLU B:289 , ASN B:291 , ANP B:457 , HOH B:611 , HOH B:684
BINDING SITE FOR RESIDUE CA B 456
11
BC2
SOFTWARE
LYS B:117 , ILE B:132 , ILE B:157 , LYS B:159 , GLY B:164 , GLY B:165 , GLY B:166 , MSE B:169 , GLU B:201 , LYS B:202 , TYR B:203 , ILE B:204 , HIS B:209 , GLN B:233 , HIS B:236 , GLU B:276 , LEU B:278 , GLU B:289 , THR B:437 , HOH B:444 , CA B:455 , CA B:456 , HOH B:508 , HOH B:583 , HOH B:584 , HOH B:585 , HOH B:610 , HOH B:615 , HOH B:717 , HOH B:736
BINDING SITE FOR RESIDUE ANP B 457
12
BC3
SOFTWARE
MSE B:114 , SER B:115 , LYS B:117 , ALA B:161 , ALA B:162 , GLY B:163 , HOH B:560 , HOH B:612 , HOH B:684
BINDING SITE FOR RESIDUE CAC B 458
13
BC4
SOFTWARE
SER B:344 , LYS B:415 , THR B:416
BINDING SITE FOR RESIDUE FMT B 459
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3ouua3 (A:330-443)
1b: SCOP_d3ouub3 (B:330-443)
2a: SCOP_d3ouua2 (A:117-329)
2b: SCOP_d3ouub2 (B:117-329)
3a: SCOP_d3ouua1 (A:-2-116)
3b: SCOP_d3ouub1 (B:1-116)
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Campylobacter jejuni [TaxId: 192222]
(2)
1a
d3ouua3
A:330-443
1b
d3ouub3
B:330-443
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Campylobacter jejuni [TaxId: 192222]
(2)
2a
d3ouua2
A:117-329
2b
d3ouub2
B:117-329
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
automated matches
(45)
Protein domain
:
automated matches
(45)
Campylobacter jejuni [TaxId: 192222]
(2)
3a
d3ouua1
A:-2-116
3b
d3ouub1
B:1-116
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_CPSase_L_D2_3ouuB01 (B:116-325)
1b: PFAM_CPSase_L_D2_3ouuB02 (B:116-325)
2a: PFAM_Biotin_carb_C_3ouuB03 (B:336-441)
2b: PFAM_Biotin_carb_C_3ouuB04 (B:336-441)
3a: PFAM_CPSase_L_chain_3ouuB05 (B:2-111)
3b: PFAM_CPSase_L_chain_3ouuB06 (B:2-111)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
ATP-grasp
(83)
Family
:
CPSase_L_D2
(25)
Campylobacter jejuni
(2)
1a
CPSase_L_D2-3ouuB01
B:116-325
1b
CPSase_L_D2-3ouuB02
B:116-325
Clan
:
no clan defined [family: Biotin_carb_C]
(23)
Family
:
Biotin_carb_C
(23)
Campylobacter jejuni
(2)
2a
Biotin_carb_C-3ouuB03
B:336-441
2b
Biotin_carb_C-3ouuB04
B:336-441
Clan
:
no clan defined [family: CPSase_L_chain]
(25)
Family
:
CPSase_L_chain
(25)
Campylobacter jejuni
(2)
3a
CPSase_L_chain-3ouuB05
B:2-111
3b
CPSase_L_chain-3ouuB06
B:2-111
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