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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3OUI
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (35 KB)
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(1)
Title
:
PHD2-R717 WITH 40787422
Authors
:
T. L. Arakaki, H. Kim
Date
:
14 Sep 10 (Deposition) - 01 Dec 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Phd2, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Rosen, H. Venkatesan, H. M. Peltier, S. D. Bembenek, K. C. Kanelakis, L. X. Zhao, B. E. Leonard, F. M. Hocutt, X. Wu, H. L. Palomino, T. I. Brondstetter, P. V. Haugh, L. Cagnon, W. Yan, L. A. Liotta, A. Young, T. Mirzadegan, N. P. Shankley, T. D. Barrett, M. H. Rabinowitz
Benzimidazole-2-Pyrazole Hif Prolyl 4-Hydroxylase Inhibitor As Oral Erythropoietin Secretagogues
Acs Med. Chem. Lett. 2010
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: N-[(5,6-DICHLORO-1H-BENZIMIDAZOL-2... (42Za)
1b: N-[(5,6-DICHLORO-1H-BENZIMIDAZOL-2... (42Zb)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
3a: FE (II) ION (FE2a)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
42Z
2
Ligand/Ion
N-[(5,6-DICHLORO-1H-BENZIMIDAZOL-2-YL)CARBONYL]GLYCINE
2
ACT
2
Ligand/Ion
ACETATE ION
3
FE2
1
Ligand/Ion
FE (II) ION
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:357 , ARG A:362
BINDING SITE FOR RESIDUE ACT A 901
2
AC2
SOFTWARE
HOH A:46 , HOH A:109 , LYS A:332 , ASP A:333 , LYS A:359
BINDING SITE FOR RESIDUE ACT A 903
3
AC3
SOFTWARE
HOH A:3 , HIS A:313 , ASP A:315 , HIS A:374 , 42Z A:393
BINDING SITE FOR RESIDUE FE2 A 1
4
AC4
SOFTWARE
FE2 A:1 , HOH A:3 , HOH A:17 , HOH A:20 , HOH A:30 , ARG A:252 , MET A:299 , TYR A:310 , HIS A:313 , ASP A:315 , TYR A:329 , HIS A:374 , VAL A:376 , ARG A:383 , PEG A:902
BINDING SITE FOR RESIDUE 42Z A 393
5
AC5
SOFTWARE
HOH A:23 , VAL A:199 , ASN A:203 , ILE A:280 , CYS A:283 , LYS A:286 , SER A:289 , TYR A:290
BINDING SITE FOR RESIDUE 42Z A 2
6
AC6
SOFTWARE
LYS A:234 , TRP A:389 , 42Z A:393
BINDING SITE FOR RESIDUE PEG A 902
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_027371 (P317R, chain A, )
2: VAR_045902 (R371H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_027371
P
317
R
EGLN1_HUMAN
Disease (ECYT3)
---
A
P
317
R
2
UniProt
VAR_045902
R
371
H
EGLN1_HUMAN
Disease (ECYT3)
---
A
R
371
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FE2OG_OXY (A:291-392)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FE2OG_OXY
PS51471
Fe(2+) 2-oxoglutarate dioxygenase domain profile.
EGLN1_HUMAN
291-392
1
A:291-392
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:189-297 (gaps))
Exon 1.3 (A:298-337 (gaps))
Exon 1.4 (A:338-383)
Exon 1.5 (A:383-392)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000366641
1
ENSE00001257532
chr1:
231560790-231556744
4047
EGLN1_HUMAN
1-297
297
1
A:189-297 (gaps)
109
1.3
ENST00000366641
3
ENSE00001713815
chr1:
231509845-231509726
120
EGLN1_HUMAN
298-337
40
1
A:298-337 (gaps)
40
1.4
ENST00000366641
4
ENSE00000921387
chr1:
231506444-231506308
137
EGLN1_HUMAN
338-383
46
1
A:338-383
46
1.5
ENST00000366641
5
ENSE00000921386
chr1:
231503382-231503315
68
EGLN1_HUMAN
383-406
24
1
A:383-392
10
1.6b
ENST00000366641
6b
ENSE00001888819
chr1:
231502221-231499497
2725
EGLN1_HUMAN
406-426
21
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_2OG_FeII_Oxy_3_3ouiA01 (A:298-391)
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Clan
:
Cupin
(179)
Family
:
2OG-FeII_Oxy_3
(3)
Homo sapiens (Human)
(3)
1a
2OG-FeII_Oxy_3-3ouiA01
A:298-391
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Chain A
Asymmetric Unit 1
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