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3OU5
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (137 KB)
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(1)
Title
:
HUMAN MITOCHONDRIAL SERINE HYDROXYMETHYLTRANSFERASE 2
Authors
:
A. Dong, H. Wu, H. Zeng, P. Loppnau, M. Sundstrom, C. H. Arrowsmith, A. M. A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (S
Date
:
14 Sep 10 (Deposition) - 27 Oct 10 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Serine Hydroxymethyltransferase 2, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wu, A. Dong, H. Zeng, P. Loppnau, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Crystal Structure Of Human Mitochondrial Serine Hydroxymethyltransferase 2
To Be Published
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SHMT (A:256-272)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SHMT
PS00096
Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.
GLYM_HUMAN
272-288
1
A:256-272
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Exons
(11, 11)
Info
All Exons
Exon 1.3 (A:26-61)
Exon 1.4 (A:62-83)
Exon 1.5b (A:94-149 (gaps))
Exon 1.6 (A:178-182)
Exon 1.7b (A:183-223)
Exon 1.8 (A:224-270)
Exon 1.9 (A:270-325 (gaps))
Exon 1.10 (A:326-359)
Exon 1.11 (A:359-411)
Exon 1.12 (A:411-447)
Exon 1.13b (A:447-488)
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All Exon Boundaries
01: Boundary 1.1b/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5b
04: Boundary 1.5b/1.6
05: Boundary 1.6/1.7b
06: Boundary 1.7b/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13b
12: Boundary 1.13b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000328923
1b
ENSE00001325595
chr12:
57623552-57623594
43
GLYM_HUMAN
1-11
11
0
-
-
1.3
ENST00000328923
3
ENSE00001594264
chr12:
57624586-57624783
198
GLYM_HUMAN
12-77
66
1
A:26-61
36
1.4
ENST00000328923
4
ENSE00001764231
chr12:
57625264-57625343
80
GLYM_HUMAN
78-104
27
1
A:62-83
22
1.5b
ENST00000328923
5b
ENSE00001738090
chr12:
57625496-57625696
201
GLYM_HUMAN
104-171
68
1
A:94-149 (gaps)
56
1.6
ENST00000328923
6
ENSE00001746009
chr12:
57625994-57626075
82
GLYM_HUMAN
171-198
28
1
A:178-182
5
1.7b
ENST00000328923
7b
ENSE00001294160
chr12:
57626236-57626358
123
GLYM_HUMAN
199-239
41
1
A:183-223
41
1.8
ENST00000328923
8
ENSE00001320599
chr12:
57626487-57626626
140
GLYM_HUMAN
240-286
47
1
A:224-270
47
1.9
ENST00000328923
9
ENSE00001303030
chr12:
57626963-57627128
166
GLYM_HUMAN
286-341
56
1
A:270-325 (gaps)
56
1.10
ENST00000328923
10
ENSE00001318902
chr12:
57627346-57627445
100
GLYM_HUMAN
342-375
34
1
A:326-359
34
1.11
ENST00000328923
11
ENSE00001301671
chr12:
57627532-57627687
156
GLYM_HUMAN
375-427
53
1
A:359-411
53
1.12
ENST00000328923
12
ENSE00001328698
chr12:
57627786-57627893
108
GLYM_HUMAN
427-463
37
1
A:411-447
37
1.13b
ENST00000328923
13b
ENSE00001317483
chr12:
57628017-57628714
698
GLYM_HUMAN
463-504
42
1
A:447-488
42
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ou5a_ (A:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Serine hydroxymethyltransferase
(50)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(1)
1a
d3ou5a_
A:
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CATH Domains
(0, 0 ; only for superseded entry 2A7V: 2,2)
Info
all CATH domains
1a: CATH_2a7vA01 ()
2a: CATH_2a7vA02 ()
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_SHMT_3ou5A01 (A:33-432)
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Clan
:
PLP_aminotran
(240)
Family
:
SHMT
(45)
Homo sapiens (Human)
(1)
1a
SHMT-3ou5A01
A:33-432
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