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3OTN
Biol. Unit 3
Info
Asym.Unit (344 KB)
Biol.Unit 1 (171 KB)
Biol.Unit 2 (169 KB)
Biol.Unit 3 (335 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SUSD SUPERFAMILY PROTEIN (BDI_3964) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.95 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
13 Sep 10 (Deposition) - 03 Nov 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Putative Outer Membrane Protein, Susd, Carbohydrate Binding, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Susd Superfamily Protein (Bdi_3964) From Parabacteroides Distasonis Atcc 8503 At 1. 95 A Resolution
To Be Published
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Hetero Components
(4, 54)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
2a: CHLORIDE ION (CLa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
11
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
24
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
5
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:168 , SER B:168 , HOH B:1136
BINDING SITE FOR RESIDUE CL A 600
02
AC2
SOFTWARE
ASN A:268 , GLN A:278 , PHE A:279 , SER A:280 , ASN A:378
BINDING SITE FOR RESIDUE ACT A 601
03
AC3
SOFTWARE
TRP A:107 , TYR A:111 , PRO A:161 , ILE A:163 , EDO A:625 , HOH A:640 , HOH A:1070
BINDING SITE FOR RESIDUE ACT A 603
04
AC4
SOFTWARE
ASN A:136 , MSE A:139 , ALA A:140 , LYS A:143 , GLU A:194
BINDING SITE FOR RESIDUE ACT A 604
05
AC5
SOFTWARE
ALA A:45 , ASN A:48 , HOH A:675 , ALA B:496
BINDING SITE FOR RESIDUE ACT A 606
06
AC6
SOFTWARE
SER A:428 , GLU A:432 , EDO A:626 , HOH A:1133
BINDING SITE FOR RESIDUE ACT A 607
07
AC7
SOFTWARE
SER A:318 , ARG A:459 , ASP A:461 , LYS A:462 , ACT A:609
BINDING SITE FOR RESIDUE ACT A 608
08
AC8
SOFTWARE
SER A:318 , GLU A:320 , ARG A:459 , ACT A:608 , HOH A:1029
BINDING SITE FOR RESIDUE ACT A 609
09
AC9
SOFTWARE
VAL A:277 , GLN A:278 , ARG A:284 , HOH A:684 , HOH A:1146
BINDING SITE FOR RESIDUE EDO A 612
10
BC1
SOFTWARE
LEU A:94 , LEU A:95 , VAL A:96 , TYR A:506 , HOH A:701 , HOH A:779
BINDING SITE FOR RESIDUE EDO A 613
11
BC2
SOFTWARE
TYR A:111 , ILE A:163 , GLN A:167 , ACT A:603 , HOH A:638 , HOH A:865
BINDING SITE FOR RESIDUE EDO A 625
12
BC3
SOFTWARE
VAL A:396 , ALA A:427 , SER A:428 , ACT A:607
BINDING SITE FOR RESIDUE EDO A 626
13
BC4
SOFTWARE
THR A:334 , ASN A:335 , ASP A:354 , HOH A:1248
BINDING SITE FOR RESIDUE EDO A 627
14
BC5
SOFTWARE
LEU A:281 , ASN A:282 , ASP A:376 , HOH B:1310
BINDING SITE FOR RESIDUE EDO A 628
15
BC6
SOFTWARE
ASN A:503 , GLN A:504 , HOH A:688 , HOH A:1291 , GLN B:504 , HOH B:1091
BINDING SITE FOR RESIDUE EDO A 630
16
BC7
SOFTWARE
ASN A:118 , ARG A:146 , THR A:164 , HOH A:851
BINDING SITE FOR RESIDUE EDO A 631
17
BC8
SOFTWARE
TYR A:384 , GLN A:405 , GLN A:412
BINDING SITE FOR RESIDUE EDO A 632
18
BC9
SOFTWARE
ASN A:48 , HOH A:1048
BINDING SITE FOR RESIDUE EDO A 634
19
CC1
SOFTWARE
GLN A:495 , HOH A:694 , HOH A:807 , HOH A:832 , HOH A:898 , HOH A:1031 , ARG B:284
BINDING SITE FOR RESIDUE PEG A 636
20
CC2
SOFTWARE
LYS B:181 , TYR B:225 , GLY B:232 , TYR B:236
BINDING SITE FOR RESIDUE ACT B 602
21
CC3
SOFTWARE
ASN B:136 , LYS B:143 , GLU B:194
BINDING SITE FOR RESIDUE ACT B 605
22
CC4
SOFTWARE
GLN A:174 , ALA A:496 , PRO A:498 , ALA B:45 , ASN B:48 , HOH B:939
BINDING SITE FOR RESIDUE ACT B 610
23
CC5
SOFTWARE
SER B:428 , GLU B:432 , TRP B:435
BINDING SITE FOR RESIDUE ACT B 611
24
CC6
SOFTWARE
LEU B:94 , LEU B:95 , VAL B:96 , HOH B:912
BINDING SITE FOR RESIDUE EDO B 614
25
CC7
SOFTWARE
PRO B:161 , LYS B:162 , VAL B:175 , SER B:176 , HOH B:1275
BINDING SITE FOR RESIDUE EDO B 615
26
CC8
SOFTWARE
ASP A:354 , ASP B:185 , ILE B:189 , TYR B:225 , TYR B:236 , HOH B:964 , HOH B:1320
BINDING SITE FOR RESIDUE EDO B 616
27
CC9
SOFTWARE
ASN B:48 , HOH B:1107
BINDING SITE FOR RESIDUE EDO B 617
28
DC1
SOFTWARE
VAL B:277 , GLN B:278 , ARG B:284 , HOH B:775
BINDING SITE FOR RESIDUE EDO B 618
29
DC2
SOFTWARE
SER B:280 , LEU B:281 , ASN B:282 , ASP B:376 , HOH B:1474 , HOH B:1476
BINDING SITE FOR RESIDUE EDO B 619
30
DC3
SOFTWARE
ILE B:310 , PRO B:311 , GLY B:357 , TYR B:358 , HOH B:1391
BINDING SITE FOR RESIDUE EDO B 620
31
DC4
SOFTWARE
THR B:326 , GLU B:328
BINDING SITE FOR RESIDUE EDO B 621
32
DC5
SOFTWARE
TRP B:107 , TYR B:111 , HOH B:801
BINDING SITE FOR RESIDUE EDO B 622
33
DC6
SOFTWARE
HIS B:205 , GLU B:252 , THR B:254 , GLY B:271
BINDING SITE FOR RESIDUE EDO B 623
34
DC7
SOFTWARE
TYR B:74 , MSE B:75 , GLY B:77 , ALA B:79 , TYR B:88 , PHE B:91 , LEU B:94 , TRP B:476 , TYR B:480 , HOH B:878 , HOH B:1049
BINDING SITE FOR RESIDUE EDO B 624
35
DC8
SOFTWARE
VAL B:396 , ASN B:397 , GLY B:400 , SER B:428
BINDING SITE FOR RESIDUE EDO B 629
36
DC9
SOFTWARE
ASN B:371
BINDING SITE FOR RESIDUE EDO B 633
37
EC1
SOFTWARE
ASN B:118 , GLN B:122 , ARG B:146 , THR B:164
BINDING SITE FOR RESIDUE EDO B 635
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_SusD_3otnB01 (B:271-506)
1b: PFAM_SusD_3otnB02 (B:271-506)
2a: PFAM_SusD_like_3_3otnB03 (B:36-223)
2b: PFAM_SusD_like_3_3otnB04 (B:36-223)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
SusD
(11)
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
(1)
1a
SusD-3otnB01
B:271-506
1b
SusD-3otnB02
B:271-506
Family
:
SusD-like_3
(11)
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
(1)
2a
SusD-like_3-3otnB03
B:36-223
2b
SusD-like_3-3otnB04
B:36-223
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