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3OTN
Biol. Unit 2
Info
Asym.Unit (344 KB)
Biol.Unit 1 (171 KB)
Biol.Unit 2 (169 KB)
Biol.Unit 3 (335 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SUSD SUPERFAMILY PROTEIN (BDI_3964) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.95 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
13 Sep 10 (Deposition) - 03 Nov 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Putative Outer Membrane Protein, Susd, Carbohydrate Binding, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Susd Superfamily Protein (Bdi_3964) From Parabacteroides Distasonis Atcc 8503 At 1. 95 A Resolution
To Be Published
[
close entry info
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Hetero Components
(3, 27)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
2a: CHLORIDE ION (CLa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
5
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC5 (SOFTWARE)
03: BC5 (SOFTWARE)
04: BC6 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC5 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
21: DC8 (SOFTWARE)
22: DC9 (SOFTWARE)
23: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:168 , SER B:168 , HOH B:1136
BINDING SITE FOR RESIDUE CL A 600
02
AC5
SOFTWARE
ALA A:45 , ASN A:48 , HOH A:675 , ALA B:496
BINDING SITE FOR RESIDUE ACT A 606
03
BC5
SOFTWARE
LEU A:281 , ASN A:282 , ASP A:376 , HOH B:1310
BINDING SITE FOR RESIDUE EDO A 628
04
BC6
SOFTWARE
ASN A:503 , GLN A:504 , HOH A:688 , HOH A:1291 , GLN B:504 , HOH B:1091
BINDING SITE FOR RESIDUE EDO A 630
05
CC1
SOFTWARE
GLN A:495 , HOH A:694 , HOH A:807 , HOH A:832 , HOH A:898 , HOH A:1031 , ARG B:284
BINDING SITE FOR RESIDUE PEG A 636
06
CC2
SOFTWARE
LYS B:181 , TYR B:225 , GLY B:232 , TYR B:236
BINDING SITE FOR RESIDUE ACT B 602
07
CC3
SOFTWARE
ASN B:136 , LYS B:143 , GLU B:194
BINDING SITE FOR RESIDUE ACT B 605
08
CC4
SOFTWARE
GLN A:174 , ALA A:496 , PRO A:498 , ALA B:45 , ASN B:48 , HOH B:939
BINDING SITE FOR RESIDUE ACT B 610
09
CC5
SOFTWARE
SER B:428 , GLU B:432 , TRP B:435
BINDING SITE FOR RESIDUE ACT B 611
10
CC6
SOFTWARE
LEU B:94 , LEU B:95 , VAL B:96 , HOH B:912
BINDING SITE FOR RESIDUE EDO B 614
11
CC7
SOFTWARE
PRO B:161 , LYS B:162 , VAL B:175 , SER B:176 , HOH B:1275
BINDING SITE FOR RESIDUE EDO B 615
12
CC8
SOFTWARE
ASP A:354 , ASP B:185 , ILE B:189 , TYR B:225 , TYR B:236 , HOH B:964 , HOH B:1320
BINDING SITE FOR RESIDUE EDO B 616
13
CC9
SOFTWARE
ASN B:48 , HOH B:1107
BINDING SITE FOR RESIDUE EDO B 617
14
DC1
SOFTWARE
VAL B:277 , GLN B:278 , ARG B:284 , HOH B:775
BINDING SITE FOR RESIDUE EDO B 618
15
DC2
SOFTWARE
SER B:280 , LEU B:281 , ASN B:282 , ASP B:376 , HOH B:1474 , HOH B:1476
BINDING SITE FOR RESIDUE EDO B 619
16
DC3
SOFTWARE
ILE B:310 , PRO B:311 , GLY B:357 , TYR B:358 , HOH B:1391
BINDING SITE FOR RESIDUE EDO B 620
17
DC4
SOFTWARE
THR B:326 , GLU B:328
BINDING SITE FOR RESIDUE EDO B 621
18
DC5
SOFTWARE
TRP B:107 , TYR B:111 , HOH B:801
BINDING SITE FOR RESIDUE EDO B 622
19
DC6
SOFTWARE
HIS B:205 , GLU B:252 , THR B:254 , GLY B:271
BINDING SITE FOR RESIDUE EDO B 623
20
DC7
SOFTWARE
TYR B:74 , MSE B:75 , GLY B:77 , ALA B:79 , TYR B:88 , PHE B:91 , LEU B:94 , TRP B:476 , TYR B:480 , HOH B:878 , HOH B:1049
BINDING SITE FOR RESIDUE EDO B 624
21
DC8
SOFTWARE
VAL B:396 , ASN B:397 , GLY B:400 , SER B:428
BINDING SITE FOR RESIDUE EDO B 629
22
DC9
SOFTWARE
ASN B:371
BINDING SITE FOR RESIDUE EDO B 633
23
EC1
SOFTWARE
ASN B:118 , GLN B:122 , ARG B:146 , THR B:164
BINDING SITE FOR RESIDUE EDO B 635
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_SusD_3otnB01 (B:271-506)
1b: PFAM_SusD_3otnB02 (B:271-506)
2a: PFAM_SusD_like_3_3otnB03 (B:36-223)
2b: PFAM_SusD_like_3_3otnB04 (B:36-223)
View:
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Label:
Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
SusD
(11)
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
(1)
1a
SusD-3otnB01
B:271-506
1b
SusD-3otnB02
B:271-506
Family
:
SusD-like_3
(11)
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
(1)
2a
SusD-like_3-3otnB03
B:36-223
2b
SusD-like_3-3otnB04
B:36-223
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Asymmetric Unit 1
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Asym.Unit (344 KB)
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