PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3OSU
Biol. Unit 2
Info
Asym.Unit (89 KB)
Biol.Unit 1 (161 KB)
Biol.Unit 2 (82 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE 3-OXOACYL-ACYL CARRIER PROTEIN REDUCTASE, FABG, FROM STAPHYLOCOCCUS AUREUS
Authors
:
S. M. Anderson, Z. Wawrzak, O. Onopriyenko, A. Edwards, W. F. Anderson, A. Savchenko, Center For Structural Genomics Of Infectious Di (Csgid)
Date
:
09 Sep 10 (Deposition) - 29 Sep 10 (Release) - 29 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Structural Genomics, Csgid, Center For Structural Genomics Of Infectious Diseases, Alpha And Beta Protein, Nad(P)-Binding Rossman- Fold Domain, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Anderson, Z. Wawrzak, O. Onopriyenko, A. Edwards, W. F. Anderson A. Savchenko
Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus
To Be Published
[
close entry info
]
Hetero Components
(3, 34)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
3f: DI(HYDROXYETHYL)ETHER (PEGf)
3g: DI(HYDROXYETHYL)ETHER (PEGg)
3h: DI(HYDROXYETHYL)ETHER (PEGh)
3i: DI(HYDROXYETHYL)ETHER (PEGi)
3j: DI(HYDROXYETHYL)ETHER (PEGj)
3k: DI(HYDROXYETHYL)ETHER (PEGk)
3l: DI(HYDROXYETHYL)ETHER (PEGl)
3m: DI(HYDROXYETHYL)ETHER (PEGm)
3n: DI(HYDROXYETHYL)ETHER (PEGn)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
3
PEG
14
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:93 , GLN A:151 , TYR A:154 , HOH A:319 , HOH A:348
BINDING SITE FOR RESIDUE PEG A 247
02
AC2
SOFTWARE
PRO A:149 , GLY A:150 , HOH A:345
BINDING SITE FOR RESIDUE PEG A 248
03
AC3
SOFTWARE
GLU A:48 , ALA A:51 , LYS A:52 , HOH A:362
BINDING SITE FOR RESIDUE PEG A 249
04
AC4
SOFTWARE
ASN A:89 , ALA A:90 , GLY A:91
BINDING SITE FOR RESIDUE PEG A 250
05
AC5
SOFTWARE
LYS A:74 , GLN A:127 , HOH A:350
BINDING SITE FOR RESIDUE PEG A 251
06
AC6
SOFTWARE
ARG A:170 , VAL B:146 , ASN B:148 , PHE B:186 , GLN B:206
BINDING SITE FOR RESIDUE PEG A 252
07
AC7
SOFTWARE
LYS A:52 , GLY A:53 , PEG A:254
BINDING SITE FOR RESIDUE PEG A 253
08
AC8
SOFTWARE
LYS A:50 , GLY A:53 , PEG A:253 , ASP B:197 , LEU B:204
BINDING SITE FOR RESIDUE PEG A 254
09
AC9
SOFTWARE
ASN A:62 , ALA A:64 , ASP A:67 , THR A:112
BINDING SITE FOR RESIDUE PEG A 255
10
BC1
SOFTWARE
ARG A:14 , LYS A:41
BINDING SITE FOR RESIDUE MG A 256
11
BC2
SOFTWARE
ASN A:89 , LYS A:158 , HOH A:298
BINDING SITE FOR RESIDUE MG A 257
12
BC3
SOFTWARE
GLN A:127 , ARG A:130 , GLN A:131 , ASP B:228 , LYS B:231
BINDING SITE FOR RESIDUE PO4 A 258
13
BC4
SOFTWARE
LYS A:5 , ASP A:84 , GLY A:134 , ALA A:226 , HOH A:290 , HOH A:292
BINDING SITE FOR RESIDUE PO4 A 259
14
BC5
SOFTWARE
LYS A:166 , HOH A:271 , HOH B:310 , HOH B:338
BINDING SITE FOR RESIDUE PEG B 247
15
BC6
SOFTWARE
VAL A:146 , ASN A:148 , GLN A:206 , MSE A:244 , ARG B:170
BINDING SITE FOR RESIDUE PEG B 248
16
BC7
SOFTWARE
GLN B:127 , HOH B:320 , HOH B:331
BINDING SITE FOR RESIDUE PEG B 249
17
BC8
SOFTWARE
ASN B:89 , ALA B:90 , GLY B:91
BINDING SITE FOR RESIDUE PEG B 250
18
BC9
SOFTWARE
GLN B:151 , TYR B:154
BINDING SITE FOR RESIDUE PEG B 251
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:141-169,B:141-169)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
FABG_STAAM
141-169
2
A:141-169
B:141-169
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3osua_ (A:)
1b: SCOP_d3osub_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Staphylococcus aureus [TaxId: 158878]
(1)
1a
d3osua_
A:
1b
d3osub_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_adh_short_3osuB01 (B:5-173)
1b: PFAM_adh_short_3osuB02 (B:5-173)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Staphylococcus aureus (strain Mu50 / ATCC 700699)
(1)
1a
adh_short-3osuB01
B:5-173
1b
adh_short-3osuB02
B:5-173
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (161 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3OSU
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help