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3OS4
Biol. Unit 2
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Asym.Unit (299 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF NICOTINATE PHOSPHORIBOSYLTRANSFERASE FROM YERSINIA PESTIS
Authors
:
N. Maltseva, Y. Kim, M. Gu, W. F. Anderson, A. Joachimiak, Center For S Genomics Of Infectious Diseases (Csgid)
Date
:
08 Sep 10 (Deposition) - 22 Sep 10 (Release) - 22 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Cytosol, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Maltseva, Y. Kim, M. Gu, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Nicotinate Phosphoribosyltransferase From Yersinia Pestis
To Be Published
[
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
7c: DI(HYDROXYETHYL)ETHER (PEGc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
-1
Ligand/Ion
ACETIC ACID
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
FMT
1
Ligand/Ion
FORMIC ACID
4
GOL
3
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
7
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(9, 9)
Info
All Sites
1: AC2 (SOFTWARE)
2: BC3 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
5: BC6 (SOFTWARE)
6: BC7 (SOFTWARE)
7: BC8 (SOFTWARE)
8: BC9 (SOFTWARE)
9: CC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
VAL A:216 , GLY A:217 , FMT A:414 , HOH A:676 , HOH A:878 , HOH B:652
BINDING SITE FOR RESIDUE GOL A 411
2
BC3
SOFTWARE
MSE B:172 , GLY B:217 , THR B:218 , ILE B:255 , ARG B:282 , HOH B:568 , HOH B:674 , HOH B:675
BINDING SITE FOR RESIDUE PEG B 410
3
BC4
SOFTWARE
GLN A:229 , PRO A:366 , GLN A:387 , ARG B:136 , HOH B:786
BINDING SITE FOR RESIDUE GOL B 411
4
BC5
SOFTWARE
GLN A:148 , HOH A:605 , HOH A:706 , GLN B:243 , PHE B:274 , ARG B:277 , HOH B:472
BINDING SITE FOR RESIDUE GOL B 412
5
BC6
SOFTWARE
LEU B:47 , LYS B:106 , LEU B:107 , HOH B:687
BINDING SITE FOR RESIDUE CL B 415
6
BC7
SOFTWARE
ASP A:194 , GLU B:361 , ASP B:364
BINDING SITE FOR RESIDUE FMT B 416
7
BC8
SOFTWARE
LYS B:19 , VAL B:118 , ILE B:119 , TRP B:121 , GLU B:122 , GLU B:222 , ILE B:357 , LYS B:358 , LEU B:359 , HOH B:795
BINDING SITE FOR RESIDUE GOL B 417
8
BC9
SOFTWARE
TYR B:30 , ARG B:31 , HIS B:32 , HOH B:797
BINDING SITE FOR RESIDUE CL B 418
9
CC1
SOFTWARE
SER B:75 , HOH B:501 , HOH B:671 , HOH B:690 , HOH B:870
BINDING SITE FOR RESIDUE MG B 419
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3os4a1 (A:3-140)
1b: SCOP_d3os4b1 (B:4-140)
2a: SCOP_d3os4a2 (A:141-395)
2b: SCOP_d3os4b2 (B:141-368)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
Nicotinate/Quinolinate PRTase N-terminal domain-like
(25)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Yersinia pestis [TaxId: 214092]
(1)
1a
d3os4a1
A:3-140
1b
d3os4b1
B:4-140
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Nicotinate/Quinolinate PRTase C-terminal domain-like
(25)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Yersinia pestis [TaxId: 214092]
(1)
2a
d3os4a2
A:141-395
2b
d3os4b2
B:141-368
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NAPRTase_3os4B01 (B:169-368)
1b: PFAM_NAPRTase_3os4B02 (B:169-368)
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Clan
:
TIM_barrel
(694)
Family
:
NAPRTase
(3)
Yersinia pestis
(1)
1a
NAPRTase-3os4B01
B:169-368
1b
NAPRTase-3os4B02
B:169-368
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (299 KB)
Header - Asym.Unit
Biol.Unit 1 (153 KB)
Header - Biol.Unit 1
Biol.Unit 2 (144 KB)
Header - Biol.Unit 2
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