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3OS4
Biol. Unit 1
Info
Asym.Unit (299 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF NICOTINATE PHOSPHORIBOSYLTRANSFERASE FROM YERSINIA PESTIS
Authors
:
N. Maltseva, Y. Kim, M. Gu, W. F. Anderson, A. Joachimiak, Center For S Genomics Of Infectious Diseases (Csgid)
Date
:
08 Sep 10 (Deposition) - 22 Sep 10 (Release) - 22 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Cytosol, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Maltseva, Y. Kim, M. Gu, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Nicotinate Phosphoribosyltransferase From Yersinia Pestis
To Be Published
[
close entry info
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
7c: DI(HYDROXYETHYL)ETHER (PEGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
FMT
2
Ligand/Ion
FORMIC ACID
4
GOL
2
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
7
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC4 (SOFTWARE)
13: BC5 (SOFTWARE)
14: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:239 , ASP A:271 , HOH A:542 , HOH A:666 , HOH A:902 , HOH A:927
BINDING SITE FOR RESIDUE MG A 410
02
AC2
SOFTWARE
VAL A:216 , GLY A:217 , FMT A:414 , HOH A:676 , HOH A:878 , HOH B:652
BINDING SITE FOR RESIDUE GOL A 411
03
AC3
SOFTWARE
GLN A:3 , SER A:6 , PRO A:7 , GLU A:300 , GLY A:303 , ASP A:305 , HOH A:514 , HOH A:573 , HOH A:680 , HOH A:729 , HOH A:731
BINDING SITE FOR RESIDUE PEG A 412
04
AC4
SOFTWARE
MSE A:172 , THR A:218 , ARG A:282 , GOL A:411 , HOH A:693 , HOH A:937
BINDING SITE FOR RESIDUE FMT A 414
05
AC5
SOFTWARE
ASP A:83 , ILE A:289 , GLU A:290 , GLU A:293 , HOH A:697
BINDING SITE FOR RESIDUE ACY A 415
06
AC6
SOFTWARE
GLU A:45 , LEU A:47 , LEU A:107 , HOH A:686
BINDING SITE FOR RESIDUE CL A 417
07
AC7
SOFTWARE
ALA A:37 , VAL A:118 , ILE A:119 , TRP A:121 , GLU A:122 , GLU A:222 , ILE A:357 , LYS A:358 , LEU A:359 , HOH A:796
BINDING SITE FOR RESIDUE GOL A 418
08
AC8
SOFTWARE
ARG A:182 , HIS A:186 , HOH A:747 , HOH A:808 , HOH A:918
BINDING SITE FOR RESIDUE CL A 419
09
AC9
SOFTWARE
LYS A:153 , ASP A:318 , LEU A:319 , ILE A:339 , ARG A:342
BINDING SITE FOR RESIDUE CL A 420
10
BC1
SOFTWARE
ARG A:92 , LYS A:94 , PEG A:422 , HOH A:692 , HOH A:801 , HOH A:860
BINDING SITE FOR RESIDUE FMT A 421
11
BC2
SOFTWARE
GLY A:62 , ARG A:92 , PHE A:93 , FMT A:421 , HOH A:746 , HOH A:859
BINDING SITE FOR RESIDUE PEG A 422
12
BC4
SOFTWARE
GLN A:229 , PRO A:366 , GLN A:387 , ARG B:136 , HOH B:786
BINDING SITE FOR RESIDUE GOL B 411
13
BC5
SOFTWARE
GLN A:148 , HOH A:605 , HOH A:706 , GLN B:243 , PHE B:274 , ARG B:277 , HOH B:472
BINDING SITE FOR RESIDUE GOL B 412
14
BC7
SOFTWARE
ASP A:194 , GLU B:361 , ASP B:364
BINDING SITE FOR RESIDUE FMT B 416
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3os4a1 (A:3-140)
1b: SCOP_d3os4b1 (B:4-140)
2a: SCOP_d3os4a2 (A:141-395)
2b: SCOP_d3os4b2 (B:141-368)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
Nicotinate/Quinolinate PRTase N-terminal domain-like
(25)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Yersinia pestis [TaxId: 214092]
(1)
1a
d3os4a1
A:3-140
1b
d3os4b1
B:4-140
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Nicotinate/Quinolinate PRTase C-terminal domain-like
(25)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Yersinia pestis [TaxId: 214092]
(1)
2a
d3os4a2
A:141-395
2b
d3os4b2
B:141-368
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NAPRTase_3os4B01 (B:169-368)
1b: PFAM_NAPRTase_3os4B02 (B:169-368)
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Clans
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Organisms
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)
(
)
Clan
:
TIM_barrel
(694)
Family
:
NAPRTase
(3)
Yersinia pestis
(1)
1a
NAPRTase-3os4B01
B:169-368
1b
NAPRTase-3os4B02
B:169-368
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Chain A
Asymmetric Unit 1
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Asym.Unit (299 KB)
Header - Asym.Unit
Biol.Unit 1 (153 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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