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3OQ8
Asym. Unit
Info
Asym.Unit (552 KB)
Biol.Unit 1 (543 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ISOCITRATE LYASE FROM BRUCELLA MELITENSIS, BOUND TO THE PRODUCT MIMIC MALONATE
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
02 Sep 10 (Deposition) - 15 Sep 10 (Release) - 29 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ssgcid, Lyase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Ssgcid, A. Gardberg, T. Edwards, B. Staker, L. Stewart
Crystal Structure Of Isocitrate Lyase From Brucella Melitensis, Bound To The Product Mimic Malonate
To Be Published
[
close entry info
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
2a: MALONIC ACID (MLAa)
2b: MALONIC ACID (MLAb)
2c: MALONIC ACID (MLAc)
2d: MALONIC ACID (MLAd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
3i: SODIUM ION (NAi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
2
MLA
4
Ligand/Ion
MALONIC ACID
3
NA
9
Ligand/Ion
SODIUM ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:101 , CYS A:185 , HIS A:187 , ASN A:309 , SER A:311 , SER A:313 , THR A:343 , LEU A:344 , HOH A:430 , HOH A:464 , HOH A:560
BINDING SITE FOR RESIDUE MLA A 440
02
AC2
SOFTWARE
ALA A:92 , ARG A:116 , HOH A:498 , HOH A:547 , ALA B:92 , HOH B:998 , HOH B:1141
BINDING SITE FOR RESIDUE EDO A 450
03
AC3
SOFTWARE
ASP A:157 , SER D:103 , HOH D:534 , HOH D:917
BINDING SITE FOR RESIDUE NA A 460
04
AC4
SOFTWARE
GLY A:190 , LYS A:191 , ALA A:228 , LYS A:229 , LEU A:230 , HOH A:534 , GLU B:417
BINDING SITE FOR RESIDUE EDO A 465
05
AC5
SOFTWARE
MET A:71 , ARG A:75 , ALA A:124 , GLU A:128 , ARG A:391 , GLU A:392
BINDING SITE FOR RESIDUE EDO A 475
06
AC6
SOFTWARE
ASP A:147 , HOH A:430 , HOH A:464 , HOH A:580 , HOH A:945 , HOH A:949
BINDING SITE FOR RESIDUE NA A 501
07
AC7
SOFTWARE
CYS B:185 , HIS B:187 , ASN B:309 , SER B:311 , SER B:313 , THR B:343 , HOH B:430 , HOH B:431 , HOH B:473 , HOH B:542
BINDING SITE FOR RESIDUE MLA B 440
08
AC8
SOFTWARE
ASP B:157 , HOH B:1117 , HOH B:1118 , SER C:103 , HOH C:537
BINDING SITE FOR RESIDUE NA B 460
09
AC9
SOFTWARE
GLU A:417 , GLY B:189 , GLY B:190 , LYS B:191 , ALA B:227 , ALA B:228 , LYS B:229 , LEU B:230
BINDING SITE FOR RESIDUE EDO B 465
10
BC1
SOFTWARE
MET B:71 , ARG B:75 , ILE B:127 , GLU B:128 , ARG B:391 , GLU B:392
BINDING SITE FOR RESIDUE EDO B 475
11
BC2
SOFTWARE
ASP B:147 , HOH B:430 , HOH B:431 , HOH B:432 , HOH B:434 , HOH B:542
BINDING SITE FOR RESIDUE NA B 501
12
BC3
SOFTWARE
ASP C:101 , CYS C:185 , HIS C:187 , ASN C:309 , SER C:311 , SER C:313 , THR C:343 , HOH C:431 , HOH C:527 , HOH C:550 , HOH C:947
BINDING SITE FOR RESIDUE MLA C 440
13
BC4
SOFTWARE
SER B:103 , HOH B:697 , HOH B:961 , ASP C:157
BINDING SITE FOR RESIDUE NA C 460
14
BC5
SOFTWARE
GLY C:189 , GLY C:190 , LYS C:191 , ALA C:227 , LYS C:229 , LEU C:230 , HOH C:502
BINDING SITE FOR RESIDUE EDO C 465
15
BC6
SOFTWARE
LEU C:193 , ASP C:239 , LYS C:258 , PRO C:263 , ARG C:267 , HOH C:437 , HOH C:592
BINDING SITE FOR RESIDUE EDO C 470
16
BC7
SOFTWARE
MET C:71 , ARG C:75 , ALA C:124 , ILE C:127 , GLU C:128 , ARG C:391 , GLU C:392
BINDING SITE FOR RESIDUE EDO C 475
17
BC8
SOFTWARE
ASP C:147 , HOH C:431 , HOH C:527 , HOH C:635 , HOH C:946 , HOH C:947
BINDING SITE FOR RESIDUE NA C 501
18
BC9
SOFTWARE
CYS D:185 , HIS D:187 , ASN D:309 , SER D:311 , SER D:313 , THR D:343 , LEU D:344 , HOH D:430 , HOH D:529 , HOH D:919
BINDING SITE FOR RESIDUE MLA D 440
19
CC1
SOFTWARE
ARG C:116 , HOH C:658 , HOH C:878 , HOH C:1018 , ARG D:116 , HOH D:558
BINDING SITE FOR RESIDUE EDO C 450
20
CC2
SOFTWARE
SER A:103 , HOH A:742 , HOH A:1146 , ASP D:157
BINDING SITE FOR RESIDUE NA D 460
21
CC3
SOFTWARE
GLU C:417 , GLY D:189 , GLY D:190 , LYS D:191 , ALA D:227 , ALA D:228 , LYS D:229 , LEU D:230
BINDING SITE FOR RESIDUE EDO D 465
22
CC4
SOFTWARE
MET D:71 , ARG D:75 , ALA D:124 , GLU D:128 , ARG D:391 , GLU D:392
BINDING SITE FOR RESIDUE EDO D 475
23
CC5
SOFTWARE
ASP D:147 , HOH D:430 , HOH D:431 , HOH D:448 , HOH D:919 , HOH D:948
BINDING SITE FOR RESIDUE NA D 501
24
CC6
SOFTWARE
VAL C:243 , HOH C:580 , HOH C:666 , HOH C:1093 , HOH C:1120 , HOH D:1061
BINDING SITE FOR RESIDUE NA C 430
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_ICL_3oq8D01 (D:240-424)
1b: PFAM_ICL_3oq8D02 (D:240-424)
1c: PFAM_ICL_3oq8D03 (D:240-424)
1d: PFAM_ICL_3oq8D04 (D:240-424)
1e: PFAM_ICL_3oq8D05 (D:240-424)
1f: PFAM_ICL_3oq8D06 (D:240-424)
1g: PFAM_ICL_3oq8D07 (D:240-424)
1h: PFAM_ICL_3oq8D08 (D:240-424)
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Clans
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(
)
(
)
Organisms
(
)
(
)
Clan
:
PK_TIM
(63)
Family
:
ICL
(3)
Brucella abortus (strain 2308)
(2)
1a
ICL-3oq8D01
D:240-424
1b
ICL-3oq8D02
D:240-424
1c
ICL-3oq8D03
D:240-424
1d
ICL-3oq8D04
D:240-424
1e
ICL-3oq8D05
D:240-424
1f
ICL-3oq8D06
D:240-424
1g
ICL-3oq8D07
D:240-424
1h
ICL-3oq8D08
D:240-424
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Asymmetric Unit 1
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