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Getting 'Exon' information from database.
3OP8
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DOMAIN V FROM BETA2-GLYCOPROTEIN I
Authors
:
A. Kolyada, C. -J. Lee, A. De Biasio, N. Beglova
Date
:
31 Aug 10 (Deposition) - 05 Jan 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sushi, Antiphospholipid Syndrome, Anionic Phospholipids Binding, Lipoprotein Receptors Binding, Blood Plasma, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Kolyada, C. J. Lee, A. De Biasio, N. Beglova
A Novel Dimeric Inhibitor Targeting Beta2Gpi In Beta2Gpi/Antibody Complexes Implicated In Antiphospholipid Syndrome.
Plos One V. 5 E1534 2010
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:55 , LYS A:282 , LYS A:284 , LYS A:308
BINDING SITE FOR RESIDUE SO4 A 3
2
AC2
SOFTWARE
HOH A:10 , LYS A:251 , PRO A:304 , LYS A:305 , SER A:312
BINDING SITE FOR RESIDUE SO4 A 2
3
AC3
SOFTWARE
HOH B:29 , LYS B:251 , PRO B:304 , LYS B:305 , SER B:312
BINDING SITE FOR RESIDUE SO4 B 1
4
AC4
SOFTWARE
HOH B:106 , LYS B:282 , LYS B:317
BINDING SITE FOR RESIDUE SO4 B 4
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_000673 (L247L, chain A/B, )
2: VAR_008170 (C306G, chain A/B, )
3: VAR_008171 (W316S, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_000673
V
266
L
APOH_HUMAN
Polymorphism
4581
A/B
L
247
L
2
UniProt
VAR_008170
C
325
G
APOH_HUMAN
Polymorphism
1801689
A/B
C
306
G
3
UniProt
VAR_008171
W
335
S
APOH_HUMAN
Polymorphism
1801690
A/B
W
316
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.6 (A:243-243 | B:243-243)
Exon 1.7 (A:243-309 | B:243-309)
Exon 1.8 (A:309-326 | B:309-326)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000205948
1
ENSE00001149177
chr17:
64225556-64225434
123
APOH_HUMAN
1-22
22
0
-
-
1.2
ENST00000205948
2
ENSE00000742667
chr17:
64224314-64224138
177
APOH_HUMAN
22-81
60
0
-
-
1.3
ENST00000205948
3
ENSE00000742665
chr17:
64222242-64222146
97
APOH_HUMAN
81-113
33
0
-
-
1.4
ENST00000205948
4
ENSE00000742663
chr17:
64219892-64219816
77
APOH_HUMAN
113-139
27
0
-
-
1.5
ENST00000205948
5
ENSE00000742652
chr17:
64216860-64216672
189
APOH_HUMAN
139-202
64
0
-
-
1.6
ENST00000205948
6
ENSE00000584156
chr17:
64213085-64212906
180
APOH_HUMAN
202-262
61
2
A:243-243
B:243-243
1
1
1.7
ENST00000205948
7
ENSE00000742648
chr17:
64210768-64210571
198
APOH_HUMAN
262-328
67
2
A:243-309
B:243-309
67
67
1.8
ENST00000205948
8
ENSE00000837173
chr17:
64208306-64208148
159
APOH_HUMAN
328-345
18
2
A:309-326
B:309-326
18
18
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3op8a_ (A:)
1b: SCOP_d3op8b_ (B:)
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Protein Domains
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(
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
beta2-glycoprotein I
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3op8a_
A:
1b
d3op8b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Sushi_2_3op8B01 (B:244-326)
1b: PFAM_Sushi_2_3op8B02 (B:244-326)
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Clan
:
no clan defined [family: Sushi_2]
(3)
Family
:
Sushi_2
(3)
Homo sapiens (Human)
(3)
1a
Sushi_2-3op8B01
B:244-326
1b
Sushi_2-3op8B02
B:244-326
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Asymmetric Unit 1
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