PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3OP3
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (118 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF CELL DIVISION CYCLE 25C PROTEIN ISOFORM A FROM HOMO SAPIENS
Authors
:
Y. Kim, A. Weger, C. Hatzos, P. Savitsky, C. Johansson, L. Ball, A. Barr, M. Vollmar, J. Muniz, J. Weigelt, C. H. Arrowsmith, A. Edwards, C. Boun O. Gileadi, F. Von Delft, S. Knapp, A. Joachimiak, Structural Genom Consortium (Sgc)
Date
:
31 Aug 10 (Deposition) - 29 Sep 10 (Release) - 29 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.63
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Structural Genomics, Structural Genomics Consortium, Sgc, Alpha-Beta- Alpha Sandwich, Kinase, Cytosol, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, A. Weger, C. Hatzos, P. Savitsky, C. Johansson, L. Ball, A. Barr M. Vollmar, J. Muniz, J. Weigelt, C. H. Arrowsmith, A. Edwards, C. Bountra, O. Gileadi, F. Von Delft, S. Knapp, A. Joachimiak
Crystal Structure Of Cell Division Cycle 25C Protein Isofor A From Homo Sapiens
To Be Published
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:349 , GLN A:350 , ARG A:386
BINDING SITE FOR RESIDUE SO4 A 463
2
AC2
SOFTWARE
ARG A:392 , ARG A:396
BINDING SITE FOR RESIDUE SO4 A 464
3
AC3
SOFTWARE
LYS A:324 , PHE A:325 , TYR A:326
BINDING SITE FOR RESIDUE SO4 A 465
4
AC4
SOFTWARE
CYS A:377 , GLU A:378 , PHE A:379 , GLU A:382 , ARG A:383
BINDING SITE FOR RESIDUE SO4 A 466
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020146 (G297R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020146
G
297
R
MPIP3_HUMAN
Polymorphism
11567997
A
G
297
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RHODANESE_3 (A:321-428)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHODANESE_3
PS50206
Rhodanese domain profile.
MPIP3_HUMAN
321-428
1
A:321-428
[
close PROSITE info
]
Exons
(6, 6)
Info
All Exons
Exon 1.10 (A:280-288)
Exon 1.11a (A:289-309)
Exon 1.12 (A:310-342)
Exon 1.13 (A:343-387 (gaps))
Exon 1.14 (A:387-424)
Exon 1.15f (A:425-448)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9b/1.10
2: Boundary 1.10/1.11a
3: Boundary 1.11a/1.12
4: Boundary 1.12/1.13
5: Boundary 1.13/1.14
6: Boundary 1.14/1.15f
7: Boundary 1.15f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000323760
2b
ENSE00001853000
chr5:
137667524-137667284
241
MPIP3_HUMAN
-
0
0
-
-
1.3a
ENST00000323760
3a
ENSE00001245545
chr5:
137666907-137666676
232
MPIP3_HUMAN
1-65
65
0
-
-
1.4
ENST00000323760
4
ENSE00001086118
chr5:
137665336-137665242
95
MPIP3_HUMAN
65-97
33
0
-
-
1.5b
ENST00000323760
5b
ENSE00001774532
chr5:
137664218-137664173
46
MPIP3_HUMAN
97-112
16
0
-
-
1.6a
ENST00000323760
6a
ENSE00001086120
chr5:
137661743-137661710
34
MPIP3_HUMAN
112-123
12
0
-
-
1.7
ENST00000323760
7
ENSE00002184468
chr5:
137661593-137661504
90
MPIP3_HUMAN
124-153
30
0
-
-
1.8
ENST00000323760
8
ENSE00001245626
chr5:
137655063-137654908
156
MPIP3_HUMAN
154-205
52
0
-
-
1.9b
ENST00000323760
9b
ENSE00001086111
chr5:
137627805-137627659
147
MPIP3_HUMAN
206-254
49
0
-
-
1.10
ENST00000323760
10
ENSE00001086104
chr5:
137626429-137626328
102
MPIP3_HUMAN
255-288
34
1
A:280-288
9
1.11a
ENST00000323760
11a
ENSE00001086106
chr5:
137625252-137625190
63
MPIP3_HUMAN
289-309
21
1
A:289-309
21
1.12
ENST00000323760
12
ENSE00001086119
chr5:
137622956-137622858
99
MPIP3_HUMAN
310-342
33
1
A:310-342
33
1.13
ENST00000323760
13
ENSE00001086108
chr5:
137622319-137622186
134
MPIP3_HUMAN
343-387
45
1
A:343-387 (gaps)
45
1.14
ENST00000323760
14
ENSE00001195280
chr5:
137621822-137621711
112
MPIP3_HUMAN
387-424
38
1
A:387-424
38
1.15f
ENST00000323760
15f
ENSE00001853686
chr5:
137621530-137620954
577
MPIP3_HUMAN
425-473
49
1
A:425-448
24
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3op3a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Rhodanese/Cell cycle control phosphatase
(39)
Superfamily
:
Rhodanese/Cell cycle control phosphatase
(39)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3op3a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Rhodanese_3op3A01 (A:315-422)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Rhodanese]
(33)
Family
:
Rhodanese
(33)
Homo sapiens (Human)
(10)
1a
Rhodanese-3op3A01
A:315-422
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (65 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3OP3
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help