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3OM5
Asym. Unit
Info
Asym.Unit (315 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B. MEGATERIUM LEVANSUCRASE MUTANT N252A
Authors
:
C. P. Strube, A. Homann, M. Gamer, D. Jahn, J. Seibel, D. W. Heinz
Date
:
26 Aug 10 (Deposition) - 23 Mar 11 (Release) - 01 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Five Fold Beta-Propeller, Levansucrase, Transferase
(Keyword Search:
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Reference
:
C. P. Strube, A. Homann, M. Gamer, D. Jahn, J. Seibel, D. W. Heinz
Polysaccharide Synthesis Of The Levansucrase Sacb From Bacillus Megaterium Is Controlled By Distinct Surface Motifs.
J. Biol. Chem. V. 286 17593 2011
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: HEXAETHYLENE GLYCOL (P6Ga)
2b: HEXAETHYLENE GLYCOL (P6Gb)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
4a: TRIETHYLENE GLYCOL (PGEa)
4b: TRIETHYLENE GLYCOL (PGEb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
P6G
2
Ligand/Ion
HEXAETHYLENE GLYCOL
3
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
5
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:251 , GLN A:282 , LEU A:318 , ASN A:320 , ASP A:349 , HOH A:568
BINDING SITE FOR RESIDUE CA A 1
02
AC2
SOFTWARE
TRP A:94 , TRP A:172 , ARG A:256 , GLU A:352 , ARG A:370 , TYR A:421 , TYR A:439 , HOH A:1122
BINDING SITE FOR RESIDUE P6G A 485
03
AC3
SOFTWARE
ASP B:251 , GLN B:282 , LEU B:318 , ASN B:320 , ASP B:349 , HOH B:966
BINDING SITE FOR RESIDUE CA B 1
04
AC4
SOFTWARE
TRP B:94 , ASP B:95 , TRP B:172
BINDING SITE FOR RESIDUE P6G B 485
05
AC5
SOFTWARE
ASP C:251 , GLN C:282 , LEU C:318 , ASN C:320 , ASP C:349 , HOH C:546
BINDING SITE FOR RESIDUE CA C 1
06
AC6
SOFTWARE
HIS C:253 , ARG C:256 , GLU C:350 , ARG C:370 , LYS C:373
BINDING SITE FOR RESIDUE PGE C 485
07
AC7
SOFTWARE
TRP C:172 , HOH C:643
BINDING SITE FOR RESIDUE PGE C 486
08
AC8
SOFTWARE
ARG C:370 , PRO C:414
BINDING SITE FOR RESIDUE PEG C 487
09
AC9
SOFTWARE
ASN C:126 , THR C:169 , GLN C:170 , TYR C:191 , GLY C:193 , LYS D:194
BINDING SITE FOR RESIDUE SO4 C 488
10
BC1
SOFTWARE
HOH A:1033 , ASN C:59 , LYS C:64 , ASP C:411 , HOH C:532
BINDING SITE FOR RESIDUE SO4 C 5
11
BC2
SOFTWARE
ASP D:251 , GLN D:282 , LEU D:318 , ASN D:320 , ASP D:349 , HOH D:486
BINDING SITE FOR RESIDUE CA D 1
12
BC3
SOFTWARE
TRP D:94 , ASP D:95 , TRP D:172
BINDING SITE FOR RESIDUE PEG D 485
13
BC4
SOFTWARE
LYS C:194 , ASN D:126 , THR D:169 , GLN D:170 , GLY D:193 , HOH D:766
BINDING SITE FOR RESIDUE SO4 D 2
14
BC5
SOFTWARE
LYS D:140 , ARG D:472 , LEU D:474 , GLN D:478 , HOH D:498 , HOH D:597
BINDING SITE FOR RESIDUE SO4 D 3
15
BC6
SOFTWARE
ASN D:59 , LYS D:64 , ASP D:411
BINDING SITE FOR RESIDUE SO4 D 4
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3om5a_ (A:)
1b: SCOP_d3om5b_ (B:)
1c: SCOP_d3om5c_ (C:)
1d: SCOP_d3om5d_ (D:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
5-bladed beta-propeller
(42)
Superfamily
:
Arabinanase/levansucrase/invertase
(37)
Family
:
Levansucrase
(11)
Protein domain
:
Levansucrase
(11)
Bacillus megaterium [TaxId: 1404]
(5)
1a
d3om5a_
A:
1b
d3om5b_
B:
1c
d3om5c_
C:
1d
d3om5d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_68_3om5D01 (D:35-480)
1b: PFAM_Glyco_hydro_68_3om5D02 (D:35-480)
1c: PFAM_Glyco_hydro_68_3om5D03 (D:35-480)
1d: PFAM_Glyco_hydro_68_3om5D04 (D:35-480)
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Clan
:
B_Fructosidase
(34)
Family
:
Glyco_hydro_68
(8)
Bacillus megaterium (strain DSM 319)
(5)
1a
Glyco_hydro_68-3om5D01
D:35-480
1b
Glyco_hydro_68-3om5D02
D:35-480
1c
Glyco_hydro_68-3om5D03
D:35-480
1d
Glyco_hydro_68-3om5D04
D:35-480
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (315 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (81 KB)
Header - Biol.Unit 2
Biol.Unit 3 (82 KB)
Header - Biol.Unit 3
Biol.Unit 4 (82 KB)
Header - Biol.Unit 4
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