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3OM4
Biol. Unit 3
Info
Asym.Unit (321 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (84 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B. MEGATERIUM LEVANSUCRASE MUTANT K373A
Authors
:
C. P. Strube, A. Homann, M. Gamer, D. Jahn, J. Seibel, D. W. Heinz
Date
:
26 Aug 10 (Deposition) - 23 Mar 11 (Release) - 23 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Five Fold Beta-Propeller, Levansucrase, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. P. Strube, A. Homann, M. Gamer, D. Jahn, J. Seibel, D. W. Heinz
Crystal Structure Of B. Megaterium Levansucrase Mutant K373
To Be Published
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
3a: TETRAETHYLENE GLYCOL (PG4a)
4a: TRIETHYLENE GLYCOL (PGEa)
4b: TRIETHYLENE GLYCOL (PGEb)
4c: TRIETHYLENE GLYCOL (PGEc)
4d: TRIETHYLENE GLYCOL (PGEd)
4e: TRIETHYLENE GLYCOL (PGEe)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
4
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
5: BC4 (SOFTWARE)
6: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
HOH C:3 , ASP C:251 , GLN C:282 , LEU C:318 , ASN C:320 , ASP C:349
BINDING SITE FOR RESIDUE CA C 1
2
BC1
SOFTWARE
TRP C:94 , TRP C:172 , ARG C:256 , HOH C:858
BINDING SITE FOR RESIDUE PG4 C 485
3
BC2
SOFTWARE
PRO C:414 , ARG C:443
BINDING SITE FOR RESIDUE PGE C 486
4
BC3
SOFTWARE
THR C:169 , GLN C:170 , TYR C:191 , GLY C:193 , LYS D:194
BINDING SITE FOR RESIDUE SO4 C 2
5
BC4
SOFTWARE
SER A:311 , LYS C:140 , ARG C:472 , LEU C:474 , GLN C:478 , HOH C:509
BINDING SITE FOR RESIDUE SO4 C 4
6
BC7
SOFTWARE
LYS C:194 , ASN D:126 , THR D:169 , GLN D:170 , TYR D:191 , GLY D:193
BINDING SITE FOR RESIDUE SO4 D 486
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3om4a_ (A:)
1b: SCOP_d3om4b_ (B:)
1c: SCOP_d3om4c_ (C:)
1d: SCOP_d3om4d_ (D:)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
5-bladed beta-propeller
(42)
Superfamily
:
Arabinanase/levansucrase/invertase
(37)
Family
:
Levansucrase
(11)
Protein domain
:
Levansucrase
(11)
Bacillus megaterium [TaxId: 1404]
(5)
1a
d3om4a_
A:
1b
d3om4b_
B:
1c
d3om4c_
C:
1d
d3om4d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_68_3om4D01 (D:35-480)
1b: PFAM_Glyco_hydro_68_3om4D02 (D:35-480)
1c: PFAM_Glyco_hydro_68_3om4D03 (D:35-480)
1d: PFAM_Glyco_hydro_68_3om4D04 (D:35-480)
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Clan
:
B_Fructosidase
(34)
Family
:
Glyco_hydro_68
(8)
Bacillus megaterium (strain DSM 319)
(5)
1a
Glyco_hydro_68-3om4D01
D:35-480
1b
Glyco_hydro_68-3om4D02
D:35-480
1c
Glyco_hydro_68-3om4D03
D:35-480
1d
Glyco_hydro_68-3om4D04
D:35-480
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (321 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (83 KB)
Header - Biol.Unit 2
Biol.Unit 3 (83 KB)
Header - Biol.Unit 3
Biol.Unit 4 (84 KB)
Header - Biol.Unit 4
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