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3OLU
Asym. Unit
Info
Asym.Unit (336 KB)
Biol.Unit 1 (322 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF 1-ARACHIDONOYL GLYCEROL BOUND TO THE CYCLOOXYGENASE CHANNEL OF R513H MURINE COX-2
Authors
:
A. J. Vecchio, M. G. Malkowski
Date
:
26 Aug 10 (Deposition) - 13 Apr 11 (Release) - 29 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Monotopic Membrane Protein, Oxidoreductase, N-Glycosylation, Membrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Vecchio, M. G. Malkowski
The Structural Basis Of Endocannabinoid Oxygenation By Cyclooxygenase-2.
J. Biol. Chem. V. 286 20736 2011
[
close entry info
]
Hetero Components
(6, 31)
Info
All Hetero Components
1a: (2S)-2,3-DIHYDROXYPROPYL (5Z,8Z,11... (1AGa)
1b: (2S)-2,3-DIHYDROXYPROPYL (5Z,8Z,11... (1AGb)
2a: B-OCTYLGLUCOSIDE (BOGa)
3a: PROTOPORPHYRIN IX CONTAINING CO (COHa)
3b: PROTOPORPHYRIN IX CONTAINING CO (COHb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1AG
2
Ligand/Ion
(2S)-2,3-DIHYDROXYPROPYL (5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE
2
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
3
COH
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING CO
4
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:157 , CYS A:159 , LYS A:459
BINDING SITE FOR RESIDUE EDO A 1
02
AC2
SOFTWARE
PRO A:162 , SER A:455 , ARG A:456 , LYS A:459 , TYR A:460 , HOH A:768
BINDING SITE FOR RESIDUE EDO A 4
03
AC3
SOFTWARE
HOH A:905 , MAN B:673
BINDING SITE FOR RESIDUE EDO A 5
04
AC4
SOFTWARE
GLU A:308 , ARG A:311 , GLU A:339 , SER A:566 , LEU A:567 , ASN A:570 , HOH A:645
BINDING SITE FOR RESIDUE EDO A 12
05
AC5
SOFTWARE
LYS A:251 , TYR A:254 , ASN A:310 , HOH A:831 , HOH A:858
BINDING SITE FOR RESIDUE EDO A 13
06
AC6
SOFTWARE
ASP A:239 , ARG A:240 , LYS A:243 , GLU A:272
BINDING SITE FOR RESIDUE EDO A 14
07
AC7
SOFTWARE
HIS A:90 , GLN A:192 , LEU A:352 , SER A:353 , HIS A:513 , ALA A:516 , ILE A:517 , PHE A:518 , VAL A:523 , HOH A:844
BINDING SITE FOR RESIDUE EDO A 15
08
AC8
SOFTWARE
ARG A:120 , PHE A:205 , PHE A:209 , TYR A:348 , VAL A:349 , SER A:353 , TYR A:355 , ILE A:377 , PHE A:381 , TYR A:385 , TRP A:387 , MET A:522 , GLY A:526 , ALA A:527 , SER A:530 , LEU A:531 , GLY A:533 , LEU A:534
BINDING SITE FOR RESIDUE 1AG A 619
09
AC9
SOFTWARE
ALA A:199 , GLN A:203 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , VAL A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , LEU A:391 , VAL A:447 , HOH A:724 , HOH A:909
BINDING SITE FOR RESIDUE COH A 620
10
BC1
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , NAG A:662 , HOH A:811
BINDING SITE FOR RESIDUE NAG A 661
11
BC2
SOFTWARE
NAG A:661 , HOH A:667
BINDING SITE FOR RESIDUE NAG A 662
12
BC3
SOFTWARE
HOH A:27 , GLU A:140 , ASN A:144 , TYR A:147 , ARG A:216 , PHE A:220 , HOH A:639 , HOH A:670 , NAG A:672 , LEU B:238
BINDING SITE FOR RESIDUE NAG A 671
13
BC4
SOFTWARE
ARG A:216 , NAG A:671 , MAN A:673
BINDING SITE FOR RESIDUE NAG A 672
14
BC5
SOFTWARE
NAG A:672
BINDING SITE FOR RESIDUE MAN A 673
15
BC6
SOFTWARE
GLN A:406 , ASN A:410 , SER A:412 , ILE A:413 , GLU A:416 , HOH A:813 , HOH A:878
BINDING SITE FOR RESIDUE NAG A 681
16
BC7
SOFTWARE
GLU A:179 , LYS A:180 , ARG A:184 , ARG A:185 , ARG A:438 , GLU A:486 , GLU A:490 , GLU B:179 , ARG B:184 , ARG B:185 , ILE B:442 , GLN B:445
BINDING SITE FOR RESIDUE BOG A 703
17
BC8
SOFTWARE
HIS B:90 , GLN B:192 , LEU B:352 , SER B:353 , ALA B:516 , ILE B:517 , PHE B:518 , HOH B:659
BINDING SITE FOR RESIDUE EDO B 2
18
BC9
SOFTWARE
LYS B:251 , TYR B:254 , VAL B:261 , ASN B:310 , HOH B:760 , HOH B:862
BINDING SITE FOR RESIDUE EDO B 3
19
CC1
SOFTWARE
PRO B:162 , ARG B:456 , LYS B:459 , TYR B:460 , HOH B:649
BINDING SITE FOR RESIDUE EDO B 6
20
CC2
SOFTWARE
PRO A:547 , SER A:548 , GLU A:553 , MET B:48 , LYS B:56 , ASP B:58 , HOH B:838
BINDING SITE FOR RESIDUE EDO B 7
21
CC3
SOFTWARE
GLU B:308 , ARG B:311 , GLU B:339 , SER B:566 , LEU B:567 , ASN B:570 , HOH B:677
BINDING SITE FOR RESIDUE EDO B 8
22
CC4
SOFTWARE
LEU A:145 , SER B:143 , HOH B:652
BINDING SITE FOR RESIDUE EDO B 9
23
CC5
SOFTWARE
ASP B:239 , ARG B:240 , LYS B:243 , VAL B:271 , GLU B:272
BINDING SITE FOR RESIDUE EDO B 11
24
CC6
SOFTWARE
ARG B:120 , PHE B:205 , PHE B:209 , VAL B:349 , TYR B:355 , ASN B:375 , ILE B:377 , PHE B:381 , TYR B:385 , GLY B:526 , ALA B:527 , SER B:530 , LEU B:531 , GLY B:533 , LEU B:534 , HOH B:789
BINDING SITE FOR RESIDUE 1AG B 1
25
CC7
SOFTWARE
ALA B:199 , PHE B:200 , GLN B:203 , HIS B:207 , PHE B:210 , LYS B:211 , THR B:212 , HIS B:214 , VAL B:295 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , LEU B:391
BINDING SITE FOR RESIDUE COH B 619
26
CC8
SOFTWARE
TYR B:55 , GLU B:67 , ASN B:68 , NAG B:662 , HOH B:730
BINDING SITE FOR RESIDUE NAG B 661
27
CC9
SOFTWARE
NAG B:661 , HOH B:732 , HOH B:922
BINDING SITE FOR RESIDUE NAG B 662
28
DC1
SOFTWARE
GLU B:140 , ASN B:144 , TYR B:147 , ARG B:216 , PHE B:220 , HOH B:627 , NAG B:672 , HOH B:701 , HOH B:703
BINDING SITE FOR RESIDUE NAG B 671
29
DC2
SOFTWARE
HOH A:679 , ARG B:216 , NAG B:671 , MAN B:673 , HOH B:674
BINDING SITE FOR RESIDUE NAG B 672
30
DC3
SOFTWARE
EDO A:5 , HOH A:905 , HOH B:644 , HOH B:651 , HOH B:657 , NAG B:672 , HOH B:674
BINDING SITE FOR RESIDUE MAN B 673
31
DC4
SOFTWARE
ASN B:410 , SER B:412 , ILE B:413 , GLU B:416 , HOH B:914
BINDING SITE FOR RESIDUE NAG B 681
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:110-582,B:110-582)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
A:110-582
B:110-582
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3oluB01 (B:218-582)
1b: PFAM_An_peroxidase_3oluB02 (B:218-582)
1c: PFAM_An_peroxidase_3oluB03 (B:218-582)
1d: PFAM_An_peroxidase_3oluB04 (B:218-582)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Mus musculus (Mouse)
(11)
1a
An_peroxidase-3oluB01
B:218-582
1b
An_peroxidase-3oluB02
B:218-582
1c
An_peroxidase-3oluB03
B:218-582
1d
An_peroxidase-3oluB04
B:218-582
[
close Pfam info
]
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Asym.Unit (336 KB)
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