PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3OLP
Asym. Unit
Info
Asym.Unit (353 KB)
Biol.Unit 1 (347 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF A BACTERIAL PHOSPHOGLUCOMUTASE, AN ENZYME IMPORTANT IN THE VIRULENCE OF MULTIPLE HUMAN PATHOGENS
Authors
:
L. J. Beamer, R. Mehra-Chaudhary
Date
:
26 Aug 10 (Deposition) - 16 Feb 11 (Release) - 23 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Phosphohexomutase, Phosphoglucomutase, Isomerase, Metal Binding, Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Mehra-Chaudhary, J. Mick, J. J. Tanner, M. T. Henzl, L. J. Beamer
Crystal Structure Of A Bacterial Phosphoglucomutase, An Enzyme Involved In The Virulence Of Multiple Human Pathogens.
Proteins V. 79 1215 2011
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
2
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:146 , ASP A:304 , ASP A:306 , ASP A:308 , HOH A:590
BINDING SITE FOR RESIDUE MG A 547
2
AC2
SOFTWARE
ARG A:507 , SER A:509 , GLY A:510
BINDING SITE FOR RESIDUE PO4 A 713
3
AC3
SOFTWARE
SER B:146 , ASP B:304 , ASP B:306 , ASP B:308 , HOH B:592
BINDING SITE FOR RESIDUE MG B 547
4
AC4
SOFTWARE
ARG B:507 , GLY B:510 , LYS B:516
BINDING SITE FOR RESIDUE PO4 B 714
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_PGM_PMM_III_3olpB01 (B:320-440)
1b: PFAM_PGM_PMM_III_3olpB02 (B:320-440)
2a: PFAM_PGM_PMM_II_3olpB03 (B:209-317)
2b: PFAM_PGM_PMM_II_3olpB04 (B:209-317)
3a: PFAM_PGM_PMM_IV_3olpB05 (B:466-542)
3b: PFAM_PGM_PMM_IV_3olpB06 (B:466-542)
4a: PFAM_PGM_PMM_I_3olpB07 (B:39-182)
4b: PFAM_PGM_PMM_I_3olpB08 (B:39-182)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: PGM_PMM_III]
(17)
Family
:
PGM_PMM_III
(17)
Salmonella typhimurium
(2)
1a
PGM_PMM_III-3olpB01
B:320-440
1b
PGM_PMM_III-3olpB02
B:320-440
Clan
:
no clan defined [family: PGM_PMM_II]
(17)
Family
:
PGM_PMM_II
(17)
Salmonella typhimurium
(2)
2a
PGM_PMM_II-3olpB03
B:209-317
2b
PGM_PMM_II-3olpB04
B:209-317
Clan
:
no clan defined [family: PGM_PMM_IV]
(18)
Family
:
PGM_PMM_IV
(18)
Salmonella typhimurium
(2)
3a
PGM_PMM_IV-3olpB05
B:466-542
3b
PGM_PMM_IV-3olpB06
B:466-542
Clan
:
no clan defined [family: PGM_PMM_I]
(17)
Family
:
PGM_PMM_I
(17)
Salmonella typhimurium
(2)
4a
PGM_PMM_I-3olpB07
B:39-182
4b
PGM_PMM_I-3olpB08
B:39-182
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (353 KB)
Header - Asym.Unit
Biol.Unit 1 (347 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3OLP
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
