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Asym. Unit
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Asym.Unit (96 KB)
Biol.Unit 1 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA-AMYLASE IN COMPLEX WITH ACARVIOSTATIN I03
Authors
:
X. Qin, L. Ren
Date
:
26 Aug 10 (Deposition) - 13 Apr 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycosylation, Hydrolase-Hydrolase Inhibitor Complex, Acarviostatin I03
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Qin, L. Ren, X. Yang, F. Bai, L. Wang, P. Geng, G. Bai, Y. Shen
Structures Of Human Pancreatic Alpha-Amylase In Complex Wit Acarviostatins: Implications For Drug Design Against Type I Diabetes
J. Struct. Biol. V. 174 196 2011
[
close entry info
]
Hetero Components
(10, 18)
Info
All Hetero Components
01a: 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4... (ACIa)
02a: BETA-D-GLUCOSE (BGCa)
03a: CALCIUM ION (CAa)
04a: CHLORIDE ION (CLa)
05a: 6-DEOXY-ALPHA-D-GLUCOSE (G6Da)
06a: ALPHA-D-GLUCOSE (GLCa)
06b: ALPHA-D-GLUCOSE (GLCb)
06c: ALPHA-D-GLUCOSE (GLCc)
06d: ALPHA-D-GLUCOSE (GLCd)
06e: ALPHA-D-GLUCOSE (GLCe)
06f: ALPHA-D-GLUCOSE (GLCf)
06g: ALPHA-D-GLUCOSE (GLCg)
06h: ALPHA-D-GLUCOSE (GLCh)
06i: ALPHA-D-GLUCOSE (GLCi)
07a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
08a: N-ACETYL-D-GLUCOSAMINE (NAGa)
09a: PYROGLUTAMIC ACID (PCAa)
10a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACI
1
Ligand/Ion
6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL
2
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
3
CA
1
Ligand/Ion
CALCIUM ION
4
CL
1
Ligand/Ion
CHLORIDE ION
5
G6D
1
Ligand/Ion
6-DEOXY-ALPHA-D-GLUCOSE
6
GLC
9
Ligand/Ion
ALPHA-D-GLUCOSE
7
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
8
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PCA
1
Ligand/Ion
PYROGLUTAMIC ACID
10
SO4
1
Ligand/Ion
SULFATE ION
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:100 , ARG A:158 , ASP A:167 , HIS A:201 , HOH A:518 , HOH A:531 , HOH A:815
BINDING SITE FOR RESIDUE CA A 497
02
AC2
SOFTWARE
ARG A:195 , ASN A:298 , ARG A:337
BINDING SITE FOR RESIDUE CL A 498
03
AC3
SOFTWARE
ASN A:53 , TRP A:59
BINDING SITE FOR RESIDUE SO4 A 499
04
AC4
SOFTWARE
GLU A:171 , ARG A:176 , ASP A:206 , ASN A:459 , GLY A:460 , ASN A:461 , HOH A:620 , HOH A:651
BINDING SITE FOR RESIDUE NAG A 500
05
AC5
SOFTWARE
GLC A:508 , HOH A:569
BINDING SITE FOR RESIDUE GLC A 507
06
AC6
SOFTWARE
TYR A:131 , SER A:132 , TRP A:134 , ASP A:135 , TYR A:174 , GLC A:507 , GLC A:509 , HOH A:564
BINDING SITE FOR RESIDUE GLC A 508
07
AC7
SOFTWARE
GLN A:8 , TRP A:134 , ASP A:135 , LYS A:172 , TYR A:174 , GLC A:508 , HOH A:613
BINDING SITE FOR RESIDUE GLC A 509
08
AC8
SOFTWARE
TYR A:2 , PRO A:228 , PHE A:229 , ILE A:230 , ASN A:250 , HOH A:706
BINDING SITE FOR RESIDUE PCA A 510
09
AC9
SOFTWARE
THR A:376 , ARG A:387 , TRP A:388 , ARG A:389 , GLN A:390 , GLU A:484 , GLC A:512 , HOH A:621
BINDING SITE FOR RESIDUE GLC A 511
10
BC1
SOFTWARE
ALA A:318 , LYS A:322 , THR A:377 , TRP A:388 , GLN A:390 , GLC A:511 , BGC A:513 , HOH A:743 , HOH A:782
BINDING SITE FOR RESIDUE GLC A 512
11
BC2
SOFTWARE
ARG A:343 , GLC A:512 , HOH A:766
BINDING SITE FOR RESIDUE BGC A 513
12
BC3
SOFTWARE
HIS A:305 , GLY A:306 , ASP A:433 , ASN A:481 , SER A:482 , GLC A:502
BINDING SITE FOR RESIDUE MPD A 514
13
BC4
SOFTWARE
TRP A:58 , TRP A:59 , TYR A:62 , GLN A:63 , HIS A:101 , GLY A:104 , TYR A:151 , THR A:163 , ARG A:195 , ASP A:197 , ALA A:198 , LYS A:200 , HIS A:201 , GLU A:233 , ILE A:235 , LEU A:237 , GLU A:240 , HIS A:299 , ASP A:300 , HIS A:305 , GLY A:306 , ASP A:433 , TRP A:434 , MPD A:514 , HOH A:666 , HOH A:685 , HOH A:710 , HOH A:727 , HOH A:825
BINDING SITE FOR LINKED RESIDUES A 501 to 506
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3olda2 (A:404-496)
2a: SCOP_d3olda1 (A:2-403)
View:
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Classes
(
)
(
)
Folds
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Superfamilies
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)
(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Animal alpha-amylase
(64)
Human (Homo sapiens) [TaxId: 9606]
(47)
1a
d3olda2
A:404-496
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Animal alpha-amylase
(64)
Human (Homo sapiens) [TaxId: 9606]
(47)
2a
d3olda1
A:2-403
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Alpha_amylase_C_3oldA01 (A:406-495)
2a: PFAM_Alpha_amylase_3oldA02 (A:21-336)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GHD
(106)
Family
:
Alpha-amylase_C
(82)
Homo sapiens (Human)
(31)
1a
Alpha-amylase_C-3oldA01
A:406-495
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha-amylase
(138)
Homo sapiens (Human)
(31)
2a
Alpha-amylase-3oldA02
A:21-336
[
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]
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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