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3OL8
Asym. Unit
Info
Asym.Unit (767 KB)
Biol.Unit 1 (192 KB)
Biol.Unit 2 (192 KB)
Biol.Unit 3 (194 KB)
Biol.Unit 4 (195 KB)
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(1)
Title
:
POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH CTP-MN
Authors
:
P. Gong, O. B. Peersen
Date
:
25 Aug 10 (Deposition) - 22 Dec 10 (Release) - 12 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Rna-Dependent Rna Polymerase, Elongation Complex, Virus, Protein-Rna Complex, Transferase-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Gong, O. B. Peersen
Structural Basis For Active Site Closure By The Poliovirus Rna-Dependent Rna Polymerase.
Proc. Natl. Acad. Sci. Usa V. 107 22505 2010
[
close entry info
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Hetero Components
(5, 29)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: ISOPROPYL ALCOHOL (IPAa)
2b: ISOPROPYL ALCOHOL (IPAb)
2c: ISOPROPYL ALCOHOL (IPAc)
2d: ISOPROPYL ALCOHOL (IPAd)
2e: ISOPROPYL ALCOHOL (IPAe)
2f: ISOPROPYL ALCOHOL (IPAf)
2g: ISOPROPYL ALCOHOL (IPAg)
2h: ISOPROPYL ALCOHOL (IPAh)
2i: ISOPROPYL ALCOHOL (IPAi)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
4a: PYROPHOSPHATE 2- (POPa)
4b: PYROPHOSPHATE 2- (POPb)
4c: PYROPHOSPHATE 2- (POPc)
4d: PYROPHOSPHATE 2- (POPd)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
IPA
9
Ligand/Ion
ISOPROPYL ALCOHOL
3
MN
8
Ligand/Ion
MANGANESE (II) ION
4
POP
4
Ligand/Ion
PYROPHOSPHATE 2-
5
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:270 , HIS A:272 , CYS A:281 , GOL A:8012
BINDING SITE FOR RESIDUE ZN A 2004
02
AC2
SOFTWARE
ASP A:233 , TYR A:234 , ASP A:328 , HOH A:551 , POP A:5004 , C C:702
BINDING SITE FOR RESIDUE MN A 3007
03
AC3
SOFTWARE
ASP A:233 , ASP A:328 , ASP A:329 , A C:701 , C C:702
BINDING SITE FOR RESIDUE MN A 3008
04
AC4
SOFTWARE
ARG A:163 , LYS A:167 , ARG A:174 , GLY A:236 , TYR A:237 , HOH A:499 , HOH A:511 , HOH A:512 , HOH A:551 , MN A:3007 , C C:702
BINDING SITE FOR RESIDUE POP A 5004
05
AC5
SOFTWARE
CYS A:212 , ASP A:213 , PHE A:217
BINDING SITE FOR RESIDUE IPA A 6009
06
AC6
SOFTWARE
TYR A:313 , ILE A:316 , TYR A:334 , HIS A:336
BINDING SITE FOR RESIDUE IPA A 6011
07
AC7
SOFTWARE
ASP A:381 , GLU A:382 , HIS A:389 , TYR A:450 , TYR A:454
BINDING SITE FOR RESIDUE IPA A 6027
08
AC8
SOFTWARE
TYR A:384 , LEU A:387 , ILE E:441
BINDING SITE FOR RESIDUE IPA A 6028
09
AC9
SOFTWARE
TRP A:368 , ILE A:388
BINDING SITE FOR RESIDUE IPA A 6030
10
BC1
SOFTWARE
TRP A:5 , HIS A:272 , HOH A:553 , ZN A:2004
BINDING SITE FOR RESIDUE GOL A 8012
11
BC2
SOFTWARE
HIS E:270 , HIS E:272 , CYS E:281 , GOL E:8011
BINDING SITE FOR RESIDUE ZN E 2003
12
BC3
SOFTWARE
ASP E:233 , TYR E:234 , ASP E:328 , C G:702 , POP G:5003
BINDING SITE FOR RESIDUE MN E 3005
13
BC4
SOFTWARE
ASP E:233 , ASP E:328 , ASP E:329 , A G:701 , C G:702
BINDING SITE FOR RESIDUE MN E 3006
14
BC5
SOFTWARE
CYS E:212 , ASP E:213 , PHE E:217
BINDING SITE FOR RESIDUE IPA E 6014
15
BC6
SOFTWARE
TRP E:368 , ALA E:380 , ILE E:388
BINDING SITE FOR RESIDUE IPA E 6029
16
BC7
SOFTWARE
HIS E:272 , HOH E:510 , ZN E:2003
BINDING SITE FOR RESIDUE GOL E 8011
17
BC8
SOFTWARE
ARG E:174 , GLY E:236 , TYR E:237 , MN E:3005 , C G:702
BINDING SITE FOR RESIDUE POP G 5003
18
BC9
SOFTWARE
TRP I:5 , HIS I:270 , HIS I:272 , CYS I:281
BINDING SITE FOR RESIDUE ZN I 2002
19
CC1
SOFTWARE
ASP I:233 , TYR I:234 , ASP I:328 , POP I:5002 , C K:702
BINDING SITE FOR RESIDUE MN I 3003
20
CC2
SOFTWARE
ASP I:233 , ASP I:328 , ASP I:329 , A K:701 , C K:702
BINDING SITE FOR RESIDUE MN I 3004
21
CC3
SOFTWARE
LYS I:167 , GLY I:236 , MN I:3003 , C K:702
BINDING SITE FOR RESIDUE POP I 5002
22
CC4
SOFTWARE
CYS I:212 , TYR I:326 , HOH J:204 , U J:603 , C J:604 , HOH K:214 , G K:700
BINDING SITE FOR RESIDUE GOL J 8005
23
CC5
SOFTWARE
TRP M:5 , HIS M:270 , HIS M:272 , CYS M:281
BINDING SITE FOR RESIDUE ZN M 2001
24
CC6
SOFTWARE
ASP M:233 , TYR M:234 , ASP M:328 , C O:702 , POP O:5001
BINDING SITE FOR RESIDUE MN M 3001
25
CC7
SOFTWARE
ASP M:233 , ASP M:328 , ASP M:329 , A O:701 , C O:702
BINDING SITE FOR RESIDUE MN M 3002
26
CC8
SOFTWARE
PRO M:202 , ASP M:213 , PHE M:217
BINDING SITE FOR RESIDUE IPA M 6018
27
CC9
SOFTWARE
TYR M:313 , TYR M:334 , HIS M:336
BINDING SITE FOR RESIDUE IPA M 6019
28
DC1
SOFTWARE
CYS M:212 , TYR M:326 , HOH N:197 , U N:603 , C N:604 , HOH O:411 , G O:700
BINDING SITE FOR RESIDUE GOL N 8010
29
DC2
SOFTWARE
ARG M:174 , GLY M:236 , TYR M:237 , MN M:3001 , C O:702
BINDING SITE FOR RESIDUE POP O 5001
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ol8a_ (A:)
1b: SCOP_d3ol8e_ (E:)
1c: SCOP_d3ol8i_ (I:)
1d: SCOP_d3ol8m_ (M:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
Viral RNA polymerase
(148)
Poliovirus type 1, strain Mahoney [TaxId: 12080]
(12)
1a
d3ol8a_
A:
1b
d3ol8e_
E:
1c
d3ol8i_
I:
1d
d3ol8m_
M:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_RdRP_1_3ol8M01 (M:17-460)
1b: PFAM_RdRP_1_3ol8M02 (M:17-460)
1c: PFAM_RdRP_1_3ol8M03 (M:17-460)
1d: PFAM_RdRP_1_3ol8M04 (M:17-460)
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Clans
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Families
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(
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Organisms
(
)
(
)
Clan
:
RdRP
(210)
Family
:
RdRP_1
(44)
Human poliovirus 1
(6)
1a
RdRP_1-3ol8M01
M:17-460
1b
RdRP_1-3ol8M02
M:17-460
1c
RdRP_1-3ol8M03
M:17-460
1d
RdRP_1-3ol8M04
M:17-460
[
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]
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Chain B
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Chain F
Chain G
Chain H
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Chain J
Chain K
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Chain M
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