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Asym. Unit
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Asym.Unit (91 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF WILD-TYPE HIV-1 PROTEASE WITH NEW OXATRICYCLIC DESIGNED INHIBITOR GRL-0519A
Authors
:
Y. -F. Wang, J. Agniswamy, I. T. Weber
Date
:
24 Aug 10 (Deposition) - 22 Sep 10 (Release) - 10 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.27
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aspartic Acid Protease, Hiv-1 Protease Inhibitor Grl-0519A, Oxatricyclic Ligands, Multidrug-Resistant Hiv Strains, Wild-Type Hiv-1 Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Ghosh, C. X. Xu, K. V. Rao, A. Baldridge, J. Agniswamy, Y. F. Wang, I. T. Weber, M. Aoki, S. G. Miguel, M. Amano, H. Mitsuya
Probing Multidrug-Resistance And Protein-Ligand Interaction With Oxatricyclic Designed Ligands In Hiv-1 Protease Inhibitors.
Chemmedchem V. 5 1850 2010
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: (3R,3AS,3BR,6AS,7AS)-OCTAHYDRODIFU... (G52a)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
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Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
G52
1
Ligand/Ion
(3R,3AS,3BR,6AS,7AS)-OCTAHYDRODIFURO[2,3-B:3',2'-D]FURAN-3-YL [(1S,2R)-1-BENZYL-2-HYDROXY-3-{[(4-METHOXYPHENYL)SULFONYL](2-METHYLPROPYL)AMINO}PROPYL]CARBAMATE
3
GOL
2
Ligand/Ion
GLYCEROL
4
NA
2
Ligand/Ion
SODIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:8 , ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASP A:30 , ILE A:47 , GLY A:48 , GLY A:49 , ILE A:50 , PRO A:81 , VAL A:82 , ILE A:84 , HOH A:1001 , HOH A:1026 , HOH A:1122 , HOH A:1123 , HOH A:1160 , ARG B:108 , ASP B:125 , GLY B:127 , ALA B:128 , ASP B:129 , ASP B:130 , VAL B:132 , GLY B:148 , GLY B:149 , ILE B:150 , PRO B:181 , VAL B:182 , ILE B:184 , CL B:514
BINDING SITE FOR RESIDUE G52 A 401
02
AC2
SOFTWARE
ASP A:60 , HOH A:1107 , HOH A:1108 , HOH A:1170
BINDING SITE FOR RESIDUE NA A 502
03
AC3
SOFTWARE
TRP A:6
BINDING SITE FOR RESIDUE CL A 512
04
AC4
SOFTWARE
THR A:74 , ASN A:88 , HOH A:1016
BINDING SITE FOR RESIDUE CL A 516
05
AC5
SOFTWARE
TRP A:42 , LYS A:55 , ARG A:57 , HOH A:1151 , HOH A:1152
BINDING SITE FOR RESIDUE GOL A 601
06
AC6
SOFTWARE
ASP B:160 , HOH B:1002 , HOH B:1003 , HOH B:1004 , HOH B:1005 , HOH B:1006
BINDING SITE FOR RESIDUE NA B 501
07
AC7
SOFTWARE
ARG A:41 , THR B:174 , ASN B:188 , HOH B:1145
BINDING SITE FOR RESIDUE CL B 511
08
AC8
SOFTWARE
GLN B:118 , SER B:137 , HOH B:1072
BINDING SITE FOR RESIDUE CL B 513
09
AC9
SOFTWARE
G52 A:401 , ILE B:147 , GLY B:148
BINDING SITE FOR RESIDUE CL B 514
10
BC1
SOFTWARE
LYS B:120 , GLU B:121 , GLU B:134 , ASN B:183 , HOH B:1095 , HOH B:1175
BINDING SITE FOR RESIDUE CL B 515
11
BC2
SOFTWARE
ILE A:54 , PRO A:79 , THR B:104 , TRP B:106 , ILE B:150 , GLY B:151 , HOH B:1098
BINDING SITE FOR RESIDUE GOL B 602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ASP_PROT_RETROV (A:20-89,B:120-189)
2: ASP_PROTEASE (A:22-32,B:122-132)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_PROT_RETROV
PS50175
Aspartyl protease, retroviral-type family profile.
POL_HV1B1
520-589
2
A:20-89
B:120-189
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
POL_HV1B1
522-533
2
A:22-32
B:122-132
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RVP_3ok9B01 (B:104-198)
1b: PFAM_RVP_3ok9B02 (B:104-198)
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Clan
:
Peptidase_AA
(368)
Family
:
RVP
(212)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
1a
RVP-3ok9B01
B:104-198
1b
RVP-3ok9B02
B:104-198
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Asymmetric Unit 1
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