PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3OJV
Biol. Unit 2
Info
Asym.Unit (117 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (56 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF FGF1 COMPLEXED WITH THE ECTODOMAIN OF FGFR1C EXHIBITING AN ORDERED LIGAND SPECIFICITY-DETERMINING BETAC'-BETAE LOOP
Authors
:
A. Beenken, M. Mohammadi
Date
:
23 Aug 10 (Deposition) - 28 Dec 11 (Release) - 07 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Beta Trefoil Motif, Immunoglobulin-Like Domain, Growth Factor, Growth Factor Receptor, Extracellular, Cytokine-Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Beenken, A. V. Eliseenkova, O. A. Ibrahimi, S. K. Olsen, M. Mohammad
Plasticity In Interactions Of Fibroblast Growth Factor 1 (Fgf1) N Terminus With Fgf Receptors Underlies Promiscuity Of Fgf1.
J. Biol. Chem. V. 287 3067 2012
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
1b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
2a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
2b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
2c: N,O6-DISULFO-GLUCOSAMINE (SGNc)
3a: 1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLU... (UAPa)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(4, 4)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASN A:33 , LYS A:128 , LYS A:133 , GLN A:142 , LYS A:143 , ALA A:144 , UAP A:301 , IDS A:303 , ARG B:137
BINDING SITE FOR RESIDUE SGN A 302
2
AC4
SOFTWARE
LYS A:128 , ASN A:129 , IDS A:303 , IDS A:305 , LYS B:127 , LYS B:128 , LYS B:133
BINDING SITE FOR RESIDUE SGN A 304
3
AC5
SOFTWARE
SGN A:304 , SGN A:306 , ASN B:33 , LYS B:128 , LYS B:133 , GLN B:142 , LYS B:143 , ALA B:144
BINDING SITE FOR RESIDUE IDS A 305
4
AC6
SOFTWARE
IDS A:305 , LYS B:128 , LYS B:143
BINDING SITE FOR RESIDUE SGN A 306
[
close Site info
]
SAPs(SNPs)/Variants
(31, 31)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_021357 (G21E, chain B, )
02: VAR_070851 (L165S, chain D, )
03: VAR_017887 (A167S, chain D, )
04: VAR_072995 (V174A, chain D, )
05: VAR_030974 (C178S, chain D, )
06: VAR_070852 (L191S, chain D, )
07: VAR_030975 (W213G, chain D, )
08: VAR_030976 (D224H, chain D, )
09: VAR_069289 (Y228D, chain D, )
10: VAR_030977 (G237D, chain D, )
11: VAR_030978 (G237S, chain D, )
12: VAR_069290 (I239T, chain D, )
13: VAR_030979 (L245P, chain D, )
14: VAR_069291 (R250Q, chain D, )
15: VAR_030980 (R250W, chain D, )
16: VAR_004111 (P252R, chain D, )
17: VAR_042202 (P252T, chain D, )
18: VAR_030981 (R254Q, chain D, )
19: VAR_030982 (G270D, chain D, )
20: VAR_030983 (V273M, chain D, )
21: VAR_030984 (E274G, chain D, )
22: VAR_017888 (C277Y, chain D, )
23: VAR_030985 (P283R, chain D, )
24: VAR_030986 (I300T, chain D, )
25: VAR_030987 (N330I, chain D, )
26: VAR_030988 (S332C, chain D, )
27: VAR_030989 (Y339C, chain D, )
28: VAR_069954 (L342S, chain D, )
29: VAR_030990 (A343V, chain D, )
30: VAR_030991 (S346C, chain D, )
31: VAR_069955 (G348R, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_021357
G
21
E
FGF1_HUMAN
Polymorphism
17223632
B
G
21
E
02
UniProt
VAR_070851
L
165
S
FGFR1_HUMAN
Disease (HRTFDS)
---
D
L
165
S
03
UniProt
VAR_017887
A
167
S
FGFR1_HUMAN
Disease (HH2)
---
D
A
167
S
04
UniProt
VAR_072995
V
174
A
FGFR1_HUMAN
Disease (HH2)
---
D
V
174
A
05
UniProt
VAR_030974
C
178
S
FGFR1_HUMAN
Disease (HH2)
---
D
C
178
S
06
UniProt
VAR_070852
L
191
S
FGFR1_HUMAN
Disease (HRTFDS)
---
D
L
191
S
07
UniProt
VAR_030975
W
213
G
FGFR1_HUMAN
Polymorphism
17851623
D
W
213
G
08
UniProt
VAR_030976
D
224
H
FGFR1_HUMAN
Disease (HH2)
---
D
D
224
H
09
UniProt
VAR_069289
Y
228
D
FGFR1_HUMAN
Disease (HH2)
---
D
Y
228
D
10
UniProt
VAR_030977
G
237
D
FGFR1_HUMAN
Disease (HH2)
---
D
G
237
D
11
UniProt
VAR_030978
G
237
S
FGFR1_HUMAN
Disease (HH2)
---
D
G
237
S
12
UniProt
VAR_069290
I
239
T
FGFR1_HUMAN
Disease (HH2)
---
D
I
239
T
13
UniProt
VAR_030979
L
245
P
FGFR1_HUMAN
Disease (HH2)
---
D
L
245
P
14
UniProt
VAR_069291
R
250
Q
FGFR1_HUMAN
Disease (HH2)
---
D
R
250
Q
15
UniProt
VAR_030980
R
250
W
FGFR1_HUMAN
Disease (HH2)
---
D
R
250
W
16
UniProt
VAR_004111
P
252
R
FGFR1_HUMAN
Disease (PS)
---
D
P
252
R
17
UniProt
VAR_042202
P
252
T
FGFR1_HUMAN
Unclassified
---
D
P
252
T
18
UniProt
VAR_030981
R
254
Q
FGFR1_HUMAN
Disease (HH2)
---
D
R
254
Q
19
UniProt
VAR_030982
G
270
D
FGFR1_HUMAN
Disease (HH2)
---
D
G
270
D
20
UniProt
VAR_030983
V
273
M
FGFR1_HUMAN
Disease (HH2)
---
D
V
273
M
21
UniProt
VAR_030984
E
274
G
FGFR1_HUMAN
Disease (HH2)
---
D
E
274
G
22
UniProt
VAR_017888
C
277
Y
FGFR1_HUMAN
Disease (HH2)
---
D
C
277
Y
23
UniProt
VAR_030985
P
283
R
FGFR1_HUMAN
Disease (HH2)
---
D
P
283
R
24
UniProt
VAR_030986
I
300
T
FGFR1_HUMAN
Disease (TRIGNO1)
---
D
I
300
T
25
UniProt
VAR_030987
N
330
I
FGFR1_HUMAN
Disease (OGD)
---
D
N
330
I
26
UniProt
VAR_030988
S
332
C
FGFR1_HUMAN
Disease (HH2)
---
D
S
332
C
27
UniProt
VAR_030989
Y
339
C
FGFR1_HUMAN
Disease (HH2)
---
D
Y
339
C
28
UniProt
VAR_069954
L
342
S
FGFR1_HUMAN
Disease (HH2)
---
D
L
342
S
29
UniProt
VAR_030990
A
343
V
FGFR1_HUMAN
Disease (HH2)
---
D
A
343
V
30
UniProt
VAR_030991
S
346
C
FGFR1_HUMAN
Disease (HH2)
---
D
S
346
C
31
UniProt
VAR_069955
G
348
R
FGFR1_HUMAN
Disease (HH2)
---
D
G
348
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (B:86-109)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_HUMAN
86-109
1
-
B:86-109
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3ojva_ (A:)
1b: SCOP_d3ojvb_ (B:)
2a: SCOP_d3ojvc1 (C:147-249)
2b: SCOP_d3ojvc2 (C:250-359)
2c: SCOP_d3ojvd1 (D:147-249)
2d: SCOP_d3ojvd2 (D:250-359)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Human (Homo sapiens) [TaxId: 9606]
(84)
1a
d3ojva_
A:
1b
d3ojvb_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
2a
d3ojvc1
C:147-249
2b
d3ojvc2
C:250-359
2c
d3ojvd1
D:147-249
2d
d3ojvd2
D:250-359
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (117 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3OJV
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help