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3OJO
Asym. Unit
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Asym.Unit (145 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
DERIVATIVE STRUCTURE OF THE UDP-N-ACETYL-MANNOSAMINE DEHYDROGENASE CAP5O FROM S. AUREUS
Authors
:
S. Nessler, J. Gruszczyk, V. Olivares-Illana, P. Meyer, S. Morera
Date
:
23 Aug 10 (Deposition) - 23 Mar 11 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rossmann Fold, Complex With Cofactor Nad And Eu(Pdc)3, Oxidized Conformation, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Gruszczyk, A. Fleurie, V. Olivares-Illana, E. Bechet, I. Zanella-Cleon, S. Morera, P. Meyer, G. Pompidor, R. Kahn, C. Grangeasse, S. Nessler
Structure Analysis Of The Staphylococcus Aureus Udp-N-Acetyl-Mannosamine Dehydrogenase Cap5O Involved In Capsular Polysaccharide Biosynthesis.
J. Biol. Chem. V. 286 17112 2011
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: EUROPIUM ION (EUa)
1b: EUROPIUM ION (EUb)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3a: PYRIDINE-2,6-DICARBOXYLIC ACID (PDCa)
3b: PYRIDINE-2,6-DICARBOXYLIC ACID (PDCb)
3c: PYRIDINE-2,6-DICARBOXYLIC ACID (PDCc)
3d: PYRIDINE-2,6-DICARBOXYLIC ACID (PDCd)
3e: PYRIDINE-2,6-DICARBOXYLIC ACID (PDCe)
3f: PYRIDINE-2,6-DICARBOXYLIC ACID (PDCf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EU
2
Ligand/Ion
EUROPIUM ION
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
PDC
6
Ligand/Ion
PYRIDINE-2,6-DICARBOXYLIC ACID
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:6 , GLY A:7 , GLY A:9 , TYR A:10 , ILE A:11 , VAL A:29 , ASP A:30 , ILE A:31 , VAL A:80 , PRO A:81 , THR A:82 , THR A:119 , VAL A:153 , HIS A:257 , ARG A:322 , HOH A:467 , HOH A:473 , ASP B:351
BINDING SITE FOR RESIDUE NAD A 500
02
AC2
SOFTWARE
ARG A:211 , TYR A:314 , LYS A:315 , EU A:501 , PDC A:503 , PDC A:504 , HOH B:439
BINDING SITE FOR RESIDUE PDC A 502
03
AC3
SOFTWARE
ARG A:152 , VAL A:153 , GLU A:161 , LYS A:315 , HOH A:427 , EU A:501 , PDC A:502 , PDC A:504 , HIS B:242
BINDING SITE FOR RESIDUE PDC A 503
04
AC4
SOFTWARE
ARG A:152 , GLU A:207 , ASN A:208 , ARG A:211 , EU A:501 , PDC A:502 , PDC A:503 , HIS B:242 , ARG B:244 , VAL B:245 , HOH B:466
BINDING SITE FOR RESIDUE PDC A 504
05
AC5
SOFTWARE
PDC B:502 , PDC B:503 , PDC B:504
BINDING SITE FOR RESIDUE EU B 501
06
AC6
SOFTWARE
ARG A:244 , ARG B:211 , LYS B:315 , EU B:501 , PDC B:502 , PDC B:503
BINDING SITE FOR RESIDUE PDC B 504
07
AC7
SOFTWARE
PDC A:502 , PDC A:503 , PDC A:504
BINDING SITE FOR RESIDUE EU A 501
08
AC8
SOFTWARE
ASN A:135 , VAL B:6 , GLY B:7 , GLY B:9 , TYR B:10 , ILE B:11 , ASP B:30 , ILE B:31 , VAL B:80 , PRO B:81 , THR B:82 , THR B:119 , GLU B:151 , VAL B:153 , ARG B:322 , HOH B:421 , HOH B:424 , HOH B:431
BINDING SITE FOR RESIDUE NAD B 500
09
AC9
SOFTWARE
HIS A:242 , ARG A:244 , ARG B:152 , VAL B:153 , GLU B:161 , LYS B:315 , EU B:501 , PDC B:503 , PDC B:504
BINDING SITE FOR RESIDUE PDC B 502
10
BC1
SOFTWARE
HIS A:242 , ARG A:244 , ARG B:152 , GLU B:207 , ASN B:208 , ARG B:211 , EU B:501 , PDC B:502 , PDC B:504
BINDING SITE FOR RESIDUE PDC B 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_UDPG_MGDP_dh_3ojoB01 (B:197-289)
1b: PFAM_UDPG_MGDP_dh_3ojoB02 (B:197-289)
2a: PFAM_UDPG_MGDP_dh_N_3ojoB03 (B:2-185)
2b: PFAM_UDPG_MGDP_dh_N_3ojoB04 (B:2-185)
3a: PFAM_UDPG_MGDP_dh_C_3ojoB05 (B:308-401)
3b: PFAM_UDPG_MGDP_dh_C_3ojoB06 (B:308-401)
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Clans
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(
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(
)
Clan
:
6PGD_C
(47)
Family
:
UDPG_MGDP_dh
(10)
Staphylococcus aureus
(2)
1a
UDPG_MGDP_dh-3ojoB01
B:197-289
1b
UDPG_MGDP_dh-3ojoB02
B:197-289
Clan
:
NADP_Rossmann
(1239)
Family
:
UDPG_MGDP_dh_N
(10)
Staphylococcus aureus
(2)
2a
UDPG_MGDP_dh_N-3ojoB03
B:2-185
2b
UDPG_MGDP_dh_N-3ojoB04
B:2-185
Clan
:
no clan defined [family: UDPG_MGDP_dh_C]
(10)
Family
:
UDPG_MGDP_dh_C
(10)
Staphylococcus aureus
(2)
3a
UDPG_MGDP_dh_C-3ojoB05
B:308-401
3b
UDPG_MGDP_dh_C-3ojoB06
B:308-401
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Asymmetric Unit 1
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