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3OHR
Biol. Unit 1
Info
Asym.Unit (124 KB)
Biol.Unit 1 (225 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FRUCTOKINASE FROM BACILLUS SUBTILIS COMPLEXED WITH ADP
Authors
:
B. Nocek, L. Volkart, M. Cuff, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)
Date
:
17 Aug 10 (Deposition) - 15 Sep 10 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.66
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Metal Dependent, Adp Binding, D-Fructose Binding, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Rok Family, Fructokinase, Reductive Methylation, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. Nocek, A. J. Stein, R. Jedrzejczak, M. E. Cuff, H. Li, L. Volkart, A. Joachimiak
Structural Studies Of Rok Fructokinase Ydhr From Bacillus Subtilis: Insights Into Substrate Binding And Fructose Specificity.
J. Mol. Biol. V. 406 325 2011
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Hetero Components
(5, 42)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: N-DIMETHYL-LYSINE (MLYa)
2b: N-DIMETHYL-LYSINE (MLYb)
2c: N-DIMETHYL-LYSINE (MLYc)
2d: N-DIMETHYL-LYSINE (MLYd)
2e: N-DIMETHYL-LYSINE (MLYe)
2f: N-DIMETHYL-LYSINE (MLYf)
2g: N-DIMETHYL-LYSINE (MLYg)
2h: N-DIMETHYL-LYSINE (MLYh)
2i: N-DIMETHYL-LYSINE (MLYi)
2j: N-DIMETHYL-LYSINE (MLYj)
2k: N-DIMETHYL-LYSINE (MLYk)
2l: N-DIMETHYL-LYSINE (MLYl)
3a: N-METHYL-LYSINE (MLZa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
5a: SULFATE ION (SO4a)
6a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MLY
24
Mod. Amino Acid
N-DIMETHYL-LYSINE
3
MLZ
2
Mod. Amino Acid
N-METHYL-LYSINE
4
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
5
SO4
2
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:129 , THR A:130 , GLY A:181 , PRO A:182 , ALA A:192 , ALA A:193 , GLY A:229 , GLY A:230 , GLN A:233 , GLN A:234 , HOH A:351 , HOH A:352 , HOH A:366 , HOH A:371 , HOH A:376 , HOH A:397 , HOH A:420 , HOH A:441 , HOH A:443 , HOH A:518 , HOH A:537 , HOH A:567 , HOH A:632 , HOH A:640 , HOH A:642
BINDING SITE FOR RESIDUE ADP A 300
2
AC2
SOFTWARE
HIS A:153 , CYS A:168 , HIS A:171 , CYS A:174
BINDING SITE FOR RESIDUE ZN A 302
3
AC3
SOFTWARE
MLY A:78 , ALA A:79 , ASN A:274 , HOH A:586 , HOH A:618
BINDING SITE FOR RESIDUE SO4 A 303
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ROK (A:128-153)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ROK
PS01125
ROK family signature.
SCRK_BACSU
128-153
2
A:128-153
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ohra1 (A:0-118)
1b: SCOP_d3ohra2 (A:119-293)
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Classes
(
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(
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)
Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
ROK
(11)
Protein domain
:
Putative fructokinase YhdR
(3)
Bacillus subtilis [TaxId: 1423]
(3)
1a
d3ohra1
A:0-118
1b
d3ohra2
A:119-293
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CATH Domains
(0, 0 ; only for superseded entry 3EPQ: 1,2)
Info
all CATH domains
1a: CATH_3epqA02 ()
1b: CATH_3epqA01 ()
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ROK_3ohrA01 (A:4-184)
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Clans
(
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(
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Organisms
(
)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
ROK
(9)
Bacillus subtilis
(3)
1a
ROK-3ohrA01
A:4-184
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Chain A
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Asym.Unit (124 KB)
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