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Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (114 KB)
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(1)
Title
:
STRUCTURE OF THE COMPLEX OF BOVINE LACTOPEROXIDASE WITH INDOMETHACIN AT 1.9A RESOLUTION
Authors
:
N. Pandey, A. K. Singh, M. Sinha, R. P. Sing, P. Kaur, S. Sharma, T. P. Sing
Date
:
17 Aug 10 (Deposition) - 01 Dec 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bovine Lactoperoxidase, Oxidoreductase, Indomethacin, Iodide, Mpd, Thiocyanate Ion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Pandey, A. K. Singh, M. Sinha, R. P. Sing, P. Kaur, S. Sharma, T. P. Singh
Structure Of The Complex Of Bovine Lactoperoxidase With Indomethacin At 1. 9A Resolution
To Be Published
[
close entry info
]
Hetero Components
(11, 32)
Info
All Hetero Components
01a: CALCIUM ION (CAa)
02a: 1,2-ETHANEDIOL (EDOa)
02b: 1,2-ETHANEDIOL (EDOb)
03a: GLYCEROL (GOLa)
03b: GLYCEROL (GOLb)
04a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
05a: INDOMETHACIN (IMNa)
06a: IODIDE ION (IODa)
06b: IODIDE ION (IODb)
06c: IODIDE ION (IODc)
06d: IODIDE ION (IODd)
06e: IODIDE ION (IODe)
06f: IODIDE ION (IODf)
06g: IODIDE ION (IODg)
06h: IODIDE ION (IODh)
06i: IODIDE ION (IODi)
06j: IODIDE ION (IODj)
06k: IODIDE ION (IODk)
06l: IODIDE ION (IODl)
06m: IODIDE ION (IODm)
06n: IODIDE ION (IODn)
07a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
07b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
08a: N-ACETYL-D-GLUCOSAMINE (NAGa)
08b: N-ACETYL-D-GLUCOSAMINE (NAGb)
08c: N-ACETYL-D-GLUCOSAMINE (NAGc)
08d: N-ACETYL-D-GLUCOSAMINE (NAGd)
08e: N-ACETYL-D-GLUCOSAMINE (NAGe)
08f: N-ACETYL-D-GLUCOSAMINE (NAGf)
09a: THIOCYANATE ION (SCNa)
10a: PHOSPHOSERINE (SEPa)
11a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
2
Ligand/Ion
GLYCEROL
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
IMN
1
Ligand/Ion
INDOMETHACIN
6
IOD
14
Ligand/Ion
IODIDE ION
7
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
8
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
SCN
1
Ligand/Ion
THIOCYANATE ION
10
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
11
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 606
02
AC2
SOFTWARE
HIS A:222 , HIS A:558 , HOH A:1141
BINDING SITE FOR RESIDUE ZN A 617
03
AC3
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , GLN A:423 , LEU A:433 , ILE A:436 , ARG A:440 , IMN A:597 , HOH A:612 , HOH A:700 , HOH A:738 , HOH A:878
BINDING SITE FOR RESIDUE HEM A 605
04
AC4
SOFTWARE
ASN A:95 , ILE A:315 , HOH A:668 , HOH A:744
BINDING SITE FOR RESIDUE NAG A 596
05
AC5
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , NAG A:600 , HOH A:767
BINDING SITE FOR RESIDUE NAG A 599
06
AC6
SOFTWARE
NAG A:599 , HOH A:1154
BINDING SITE FOR RESIDUE NAG A 600
07
AC7
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , LYS A:388 , HOH A:825 , HOH A:919 , HOH A:968
BINDING SITE FOR RESIDUE NAG A 601
08
AC8
SOFTWARE
ASN A:332 , VAL A:335 , NAG A:616 , HOH A:885
BINDING SITE FOR RESIDUE NAG A 604
09
AC9
SOFTWARE
NAG A:604
BINDING SITE FOR RESIDUE NAG A 616
10
BC1
SOFTWARE
TRP A:46 , VAL A:342
BINDING SITE FOR RESIDUE IOD A 707
11
BC2
SOFTWARE
ASN A:80
BINDING SITE FOR RESIDUE IOD A 708
12
BC3
SOFTWARE
TRP A:530
BINDING SITE FOR RESIDUE IOD A 710
13
BC4
SOFTWARE
HIS A:565 , ALA A:566 , PHE A:567
BINDING SITE FOR RESIDUE IOD A 712
14
BC5
SOFTWARE
SER A:359 , HOH A:1020
BINDING SITE FOR RESIDUE IOD A 713
15
BC6
SOFTWARE
LYS A:462 , THR A:463
BINDING SITE FOR RESIDUE IOD A 715
16
BC7
SOFTWARE
IMN A:597
BINDING SITE FOR RESIDUE IOD A 717
17
BC8
SOFTWARE
THR A:425
BINDING SITE FOR RESIDUE IOD A 719
18
BC9
SOFTWARE
ASN A:419
BINDING SITE FOR RESIDUE IOD A 720
19
CC1
SOFTWARE
GLN A:105 , HIS A:109 , PHE A:113 , GLU A:116 , PHE A:254 , ARG A:255 , GLU A:258 , PHE A:381 , HEM A:605 , HOH A:612 , SCN A:615 , IOD A:717 , HOH A:747
BINDING SITE FOR RESIDUE IMN A 597
20
CC2
SOFTWARE
SEP A:198 , LEU A:199 , ARG A:202 , ASN A:473 , LYS A:474 , ILE A:475
BINDING SITE FOR RESIDUE MPD A 598
21
CC3
SOFTWARE
THR A:23 , ILE A:24 , PRO A:197 , LYS A:472
BINDING SITE FOR RESIDUE MPD A 607
22
CC4
SOFTWARE
ASN A:230 , IMN A:597
BINDING SITE FOR RESIDUE SCN A 615
23
CC5
SOFTWARE
LEU A:224 , ALA A:225 , ARG A:271 , HOH A:1136
BINDING SITE FOR RESIDUE EDO A 608
24
CC6
SOFTWARE
SER A:451 , GLN A:460 , ASP A:488 , HOH A:680
BINDING SITE FOR RESIDUE EDO A 609
25
CC7
SOFTWARE
LEU A:206 , MET A:501 , VAL A:502 , ARG A:504 , HOH A:1102
BINDING SITE FOR RESIDUE GOL A 610
26
CC8
SOFTWARE
ARG A:204 , ASN A:205 , LEU A:206 , SER A:208 , GLY A:289 , GLU A:290 , HOH A:757 , HOH A:1130
BINDING SITE FOR RESIDUE GOL A 611
[
close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:12-594)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PERL_BOVIN
129-711
1
A:12-594
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.5 (A:1-31)
Exon 1.6 (A:31-74)
Exon 1.7 (A:75-143)
Exon 1.8 (A:144-252)
Exon 1.9 (A:252-305)
Exon 1.10 (A:306-390)
Exon 1.11 (A:390-448)
Exon 1.12 (A:448-527)
Exon 1.13 (A:527-595)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000016986
1
ENSBTAE00000279445
chr19:
8430632-8430751
120
PERL_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000016986
2
ENSBTAE00000137885
chr19:
8435757-8435834
78
PERL_BOVIN
1-26
26
0
-
-
1.3
ENSBTAT00000016986
3
ENSBTAE00000137889
chr19:
8437178-8437265
88
PERL_BOVIN
26-55
30
0
-
-
1.4
ENSBTAT00000016986
4
ENSBTAE00000137892
chr19:
8441906-8442066
161
PERL_BOVIN
55-109
55
0
-
-
1.5
ENSBTAT00000016986
5
ENSBTAE00000137896
chr19:
8443636-8443753
118
PERL_BOVIN
109-148
40
1
A:1-31
31
1.6
ENSBTAT00000016986
6
ENSBTAE00000137903
chr19:
8444165-8444294
130
PERL_BOVIN
148-191
44
1
A:31-74
44
1.7
ENSBTAT00000016986
7
ENSBTAE00000137906
chr19:
8445032-8445238
207
PERL_BOVIN
192-260
69
1
A:75-143
69
1.8
ENSBTAT00000016986
8
ENSBTAE00000137912
chr19:
8446677-8447001
325
PERL_BOVIN
261-369
109
1
A:144-252
109
1.9
ENSBTAT00000016986
9
ENSBTAE00000137915
chr19:
8448604-8448764
161
PERL_BOVIN
369-422
54
1
A:252-305
54
1.10
ENSBTAT00000016986
10
ENSBTAE00000137918
chr19:
8457180-8457432
253
PERL_BOVIN
423-507
85
1
A:306-390
85
1.11
ENSBTAT00000016986
11
ENSBTAE00000137921
chr19:
8458505-8458678
174
PERL_BOVIN
507-565
59
1
A:390-448
59
1.12
ENSBTAT00000016986
12
ENSBTAE00000137923
chr19:
8459302-8459539
238
PERL_BOVIN
565-644
80
1
A:448-527
80
1.13
ENSBTAT00000016986
13
ENSBTAE00000279432
chr19:
8459727-8460382
656
PERL_BOVIN
644-712
69
1
A:527-595
69
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Chain A
Asymmetric Unit 1
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