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3OGV
Asym. Unit
Info
Asym.Unit (191 KB)
Biol.Unit 1 (182 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI WITH PETG
Authors
:
M. Maksimainen, J. Rouvinen
Date
:
17 Aug 10 (Deposition) - 16 Mar 11 (Release) - 18 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tim Barrel Domain, Glycoside Hydrolase, Family 35, Glycoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Maksimainen, N. Hakulinen, J. M. Kallio, T. Timoharju, O. Turunen, J. Rouvinen
Crystal Structures Of Trichoderma Reesei Beta-Galactosidase Reveal Conformational Changes In The Active Site
J. Struct. Biol. V. 174 156 2011
[
close entry info
]
Hetero Components
(5, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-GLUCOSE (GLCa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5a: 2-PHENYLETHYL 1-THIO-BETA-D-GALACT... (PTQa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
3
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PTQ
1
Ligand/Ion
2-PHENYLETHYL 1-THIO-BETA-D-GALACTOPYRANOSIDE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:96 , ILE A:139 , ASN A:140 , ALA A:141 , GLU A:142 , ASN A:199 , GLU A:200 , ASN A:235 , ALA A:237 , GLU A:298 , PHE A:304 , TYR A:342 , TYR A:364
BINDING SITE FOR RESIDUE PTQ A 1024
02
AC2
SOFTWARE
TYR A:608 , ASN A:627 , NAG A:1026 , HOH A:1083 , HOH A:1087 , HOH A:1387 , HOH A:1842
BINDING SITE FOR RESIDUE NAG A 1025
03
AC3
SOFTWARE
ASP A:375 , GLU A:377 , ASN A:577 , NAG A:1025 , BMA A:1027 , HOH A:1129 , HOH A:1194 , HOH A:1400 , HOH A:1558 , HOH A:1677 , HOH A:1709 , HOH A:1717 , HOH A:2170
BINDING SITE FOR RESIDUE NAG A 1026
04
AC4
SOFTWARE
GLU A:377 , NAG A:1026 , MAN A:1028 , MAN A:1031 , HOH A:1209 , HOH A:1833 , HOH A:1904 , HOH A:2014
BINDING SITE FOR RESIDUE BMA A 1027
05
AC5
SOFTWARE
GLU A:377 , ASN A:573 , BMA A:1027 , MAN A:1029 , HOH A:1313 , HOH A:1351 , HOH A:1652 , HOH A:1934 , HOH A:2170
BINDING SITE FOR RESIDUE MAN A 1028
06
AC6
SOFTWARE
HIS A:321 , GLU A:322 , ARG A:325 , ARG A:572 , MAN A:1028 , MAN A:1030 , HOH A:1202 , HOH A:1833 , HOH A:1904
BINDING SITE FOR RESIDUE MAN A 1029
07
AC7
SOFTWARE
MAN A:1029 , HOH A:1568 , HOH A:2096
BINDING SITE FOR RESIDUE MAN A 1030
08
AC8
SOFTWARE
ASN A:320 , BMA A:1027 , HOH A:1206 , HOH A:1209 , HOH A:1700 , HOH A:1747 , HOH A:1803 , HOH A:1807 , HOH A:2046
BINDING SITE FOR RESIDUE MAN A 1031
09
AC9
SOFTWARE
ASN A:930 , TYR A:951 , VAL A:952 , SER A:953 , ILE A:955 , GLY A:956 , PRO A:957 , GLN A:958 , NAG A:1033 , HOH A:1319 , HOH A:1683
BINDING SITE FOR RESIDUE NAG A 1032
10
BC1
SOFTWARE
GLY A:308 , ILE A:955 , NAG A:1032 , BMA A:1034 , HOH A:1172 , HOH A:1425 , HOH A:1794 , HOH A:1957
BINDING SITE FOR RESIDUE NAG A 1033
11
BC2
SOFTWARE
ASP A:776 , NAG A:1033 , MAN A:1035 , MAN A:1036 , HOH A:1374 , HOH A:1382 , HOH A:1425 , HOH A:1587
BINDING SITE FOR RESIDUE BMA A 1034
12
BC3
SOFTWARE
PHE A:775 , BMA A:1034 , HOH A:2019 , HOH A:2190
BINDING SITE FOR RESIDUE MAN A 1035
13
BC4
SOFTWARE
BMA A:1034 , MAN A:1037 , HOH A:1358 , HOH A:1619 , HOH A:1643 , HOH A:2101
BINDING SITE FOR RESIDUE MAN A 1036
14
BC5
SOFTWARE
ASP A:265 , PRO A:306 , GLY A:308 , GLY A:309 , TRP A:310 , MAN A:1036 , MAN A:1038 , HOH A:1062 , HOH A:1223 , HOH A:1712 , HOH A:1755
BINDING SITE FOR RESIDUE MAN A 1037
15
BC6
SOFTWARE
PRO A:306 , ASP A:776 , ALA A:777 , MAN A:1037 , GLC A:1039 , HOH A:1062 , HOH A:1249 , HOH A:1333 , HOH A:1507 , HOH A:2121
BINDING SITE FOR RESIDUE MAN A 1038
16
BC7
SOFTWARE
PHE A:304 , PRO A:306 , GLY A:357 , MAN A:1038 , HOH A:1260 , HOH A:1279 , HOH A:1291 , HOH A:1720 , HOH A:1834
BINDING SITE FOR RESIDUE GLC A 1039
17
BC8
SOFTWARE
ARG A:154 , GLU A:668 , THR A:707 , ASN A:709 , HOH A:1278 , HOH A:1445 , HOH A:1917 , HOH A:2205
BINDING SITE FOR RESIDUE NAG A 1040
18
BC9
SOFTWARE
ALA A:780 , ASN A:782 , HOH A:1756 , HOH A:1840 , HOH A:1913
BINDING SITE FOR RESIDUE NAG A 1041
19
CC1
SOFTWARE
ASP A:274 , ASN A:434 , SER A:436 , THR A:438 , NAG A:1043 , HOH A:1655 , HOH A:1910
BINDING SITE FOR RESIDUE NAG A 1042
20
CC2
SOFTWARE
SER A:270 , ARG A:468 , NAG A:1042 , HOH A:1350
BINDING SITE FOR RESIDUE NAG A 1043
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 5)
Info
All SCOP Domains
1a: SCOP_d3ogva3 (A:572-668)
2a: SCOP_d3ogva4 (A:669-852)
2b: SCOP_d3ogva5 (A:853-1023)
3a: SCOP_d3ogva2 (A:394-571)
4a: SCOP_d3ogva1 (A:38-393)
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Classes
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)
(
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Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Beta-galactosidase LacA, domain 3
(7)
Superfamily
:
Beta-galactosidase LacA, domain 3
(7)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Trichoderma reesei [TaxId: 51453]
(4)
1a
d3ogva3
A:572-668
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Trichoderma reesei [TaxId: 51453]
(4)
2a
d3ogva4
A:669-852
2b
d3ogva5
A:853-1023
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Trichoderma reesei [TaxId: 51453]
(4)
3a
d3ogva2
A:394-571
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Trichoderma reesei [TaxId: 51453]
(5)
4a
d3ogva1
A:38-393
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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