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3OGS
Asym. Unit
Info
Asym.Unit (185 KB)
Biol.Unit 1 (178 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI WITH IPTG
Authors
:
M. Maksimainen, J. Rouvinen
Date
:
17 Aug 10 (Deposition) - 16 Mar 11 (Release) - 18 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tim Barrel Domain, Glycoside Hydrolase, Family 35, Glycoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Maksimainen, N. Hakulinen, J. M. Kallio, T. Timoharju, O. Turunen, J. Rouvinen
Crystal Structures Of Trichoderma Reesei Beta-Galactosidase Reveal Conformational Changes In The Active Site
J. Struct. Biol. V. 174 156 2011
[
close entry info
]
Hetero Components
(5, 21)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-GLUCOSE (GLCa)
3a: ISOPROPYL-1-BETA-D-THIOGALACTOSIDE (IPTa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
3
IPT
1
Ligand/Ion
ISOPROPYL-1-BETA-D-THIOGALACTOSIDE
4
MAN
9
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:96 , ILE A:139 , ASN A:140 , ALA A:141 , GLU A:142 , ASN A:199 , ASP A:258 , GLU A:298 , PHE A:304 , TYR A:342 , TYR A:364
BINDING SITE FOR RESIDUE IPT A 1024
02
AC2
SOFTWARE
TYR A:608 , ASN A:627 , NAG A:1026 , HOH A:1072 , HOH A:1232 , HOH A:1259 , HOH A:1919
BINDING SITE FOR RESIDUE NAG A 1025
03
AC3
SOFTWARE
ASP A:375 , GLU A:377 , TYR A:576 , ASN A:577 , NAG A:1025 , BMA A:1027 , HOH A:1222 , HOH A:1440 , HOH A:1646
BINDING SITE FOR RESIDUE NAG A 1026
04
AC4
SOFTWARE
GLU A:377 , NAG A:1026 , MAN A:1028 , MAN A:1031 , HOH A:1189 , HOH A:1658 , HOH A:1702
BINDING SITE FOR RESIDUE BMA A 1027
05
AC5
SOFTWARE
GLU A:377 , ASN A:573 , BMA A:1027 , MAN A:1029 , HOH A:1251 , HOH A:1368 , HOH A:1565 , HOH A:1584
BINDING SITE FOR RESIDUE MAN A 1028
06
AC6
SOFTWARE
HIS A:321 , GLU A:322 , ARG A:325 , ARG A:572 , MAN A:1028 , MAN A:1030 , HOH A:1205 , HOH A:1702
BINDING SITE FOR RESIDUE MAN A 1029
07
AC7
SOFTWARE
MAN A:1029 , HOH A:1670 , HOH A:1950
BINDING SITE FOR RESIDUE MAN A 1030
08
AC8
SOFTWARE
ASN A:320 , BMA A:1027 , HOH A:1166 , HOH A:1189 , HOH A:1673 , HOH A:1724 , HOH A:1729 , HOH A:1787
BINDING SITE FOR RESIDUE MAN A 1031
09
AC9
SOFTWARE
ASN A:930 , TYR A:951 , SER A:953 , ILE A:955 , GLY A:956 , PRO A:957 , GLN A:958 , NAG A:1033 , HOH A:1452 , HOH A:1714
BINDING SITE FOR RESIDUE NAG A 1032
10
BC1
SOFTWARE
GLY A:308 , ILE A:955 , NAG A:1032 , BMA A:1034 , HOH A:1183 , HOH A:1596 , HOH A:1811
BINDING SITE FOR RESIDUE NAG A 1033
11
BC2
SOFTWARE
ASP A:776 , NAG A:1033 , MAN A:1035 , MAN A:1037 , HOH A:1384 , HOH A:1508 , HOH A:1591 , HOH A:1596
BINDING SITE FOR RESIDUE BMA A 1034
12
BC3
SOFTWARE
BMA A:1034 , MAN A:1036 , HOH A:1593
BINDING SITE FOR RESIDUE MAN A 1035
13
BC4
SOFTWARE
MAN A:1035
BINDING SITE FOR RESIDUE MAN A 1036
14
BC5
SOFTWARE
BMA A:1034 , MAN A:1038 , HOH A:1308 , HOH A:1960
BINDING SITE FOR RESIDUE MAN A 1037
15
BC6
SOFTWARE
ASP A:265 , PRO A:306 , TRP A:310 , MAN A:1037 , MAN A:1039 , HOH A:1101 , HOH A:1234 , HOH A:1834
BINDING SITE FOR RESIDUE MAN A 1038
16
BC7
SOFTWARE
PRO A:306 , ASP A:776 , ALA A:777 , MAN A:1038 , GLC A:1040 , HOH A:1101 , HOH A:1350 , HOH A:1461 , HOH A:1916
BINDING SITE FOR RESIDUE MAN A 1039
17
BC8
SOFTWARE
ASP A:265 , MAN A:1039 , HOH A:1420 , HOH A:1423 , HOH A:1587 , HOH A:1834 , HOH A:1916 , HOH A:1952
BINDING SITE FOR RESIDUE GLC A 1040
18
BC9
SOFTWARE
THR A:707 , ASN A:709 , HOH A:1204 , HOH A:1435
BINDING SITE FOR RESIDUE NAG A 1041
19
CC1
SOFTWARE
ASN A:782 , HOH A:1553 , HOH A:1782 , HOH A:1855
BINDING SITE FOR RESIDUE NAG A 1042
20
CC2
SOFTWARE
ASP A:274 , ASN A:434 , SER A:436 , THR A:438 , NAG A:1044 , HOH A:1918
BINDING SITE FOR RESIDUE NAG A 1043
21
CC3
SOFTWARE
NAG A:1043 , HOH A:1332
BINDING SITE FOR RESIDUE NAG A 1044
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 5)
Info
All SCOP Domains
1a: SCOP_d3ogsa3 (A:572-668)
2a: SCOP_d3ogsa4 (A:669-852)
2b: SCOP_d3ogsa5 (A:853-1023)
3a: SCOP_d3ogsa2 (A:394-571)
4a: SCOP_d3ogsa1 (A:38-393)
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Classes
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)
(
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Folds
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(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Beta-galactosidase LacA, domain 3
(7)
Superfamily
:
Beta-galactosidase LacA, domain 3
(7)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Trichoderma reesei [TaxId: 51453]
(4)
1a
d3ogsa3
A:572-668
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Trichoderma reesei [TaxId: 51453]
(4)
2a
d3ogsa4
A:669-852
2b
d3ogsa5
A:853-1023
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Trichoderma reesei [TaxId: 51453]
(4)
3a
d3ogsa2
A:394-571
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Trichoderma reesei [TaxId: 51453]
(5)
4a
d3ogsa1
A:38-393
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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]
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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