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3OFK
Biol. Unit 1
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Asym.Unit (152 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (40 KB)
Biol.Unit 3 (41 KB)
Biol.Unit 4 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF N-METHYLTRANSFERASE NODS FROM BRADYRHIZOBIUM JAPONICUM WM9 IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE (SAH)
Authors
:
O. Cakici, M. Sikorski, T. Stepkowski, G. Bujacz, M. Jaskolski
Date
:
15 Aug 10 (Deposition) - 27 Oct 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Nods, N-Methyltransferase, Sah, Sam, Nod Factor, Nodulation, Nitrogen Fixation, Symbiosis, Alpha/Beta Structure, Variant Of Rossmann Fold, Sam-Dependent N-Methyltransferase, S-Adenosyl-L-Methionine (Sam), Lipochitooligosaccharide, Methylation, Transferase
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Reference
:
O. Cakici, M. Sikorski, T. Stepkowski, G. Bujacz, M. Jaskolski
Crystal Structures Of Nods N-Methyltransferase From Bradyrhizobium Japonicum In Ligand-Free Form And As Sah Complex.
J. Mol. Biol. V. 404 874 2010
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
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All Hetero Components
1a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
1b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
1c: S-ADENOSYL-L-HOMOCYSTEINE (SAHc)
1d: S-ADENOSYL-L-HOMOCYSTEINE (SAHd)
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1
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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Description
1
AC1
SOFTWARE
LEU A:10 , LEU A:22 , ARG A:31 , HIS A:32 , GLY A:52 , CYS A:53 , ALA A:54 , ASP A:73 , VAL A:74 , MET A:75 , ASP A:98 , ILE A:99 , ALA A:114 , GLU A:115 , VAL A:116 , TYR A:119 , HOH A:215 , HOH A:216 , HOH A:235 , HOH A:268
BINDING SITE FOR RESIDUE SAH A 217
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Pfam Domains
(1, 4)
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1a: PFAM_NodS_3ofkD01 (D:23-202)
1b: PFAM_NodS_3ofkD02 (D:23-202)
1c: PFAM_NodS_3ofkD03 (D:23-202)
1d: PFAM_NodS_3ofkD04 (D:23-202)
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Clan
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NADP_Rossmann
(1239)
Family
:
NodS
(2)
Bradyrhizobium sp. (strain WM9)
(2)
1a
NodS-3ofkD01
D:23-202
1b
NodS-3ofkD02
D:23-202
1c
NodS-3ofkD03
D:23-202
1d
NodS-3ofkD04
D:23-202
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Asym.Unit (152 KB)
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