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3OEH
Biol. Unit 1
Info
Asym.Unit (3.1 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
Biol.Unit 2, α-C (1.0 MB)
Biol.Unit 2 (1.0 MB)
Biol.Unit 3, α-C (1.0 MB)
Biol.Unit 3 (1.0 MB)
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(1)
Title
:
STRUCTURE OF FOUR MUTANT FORMS OF YEAST F1 ATPASE: BETA-V279F
Authors
:
D. Arsenieva, J. Symersky, Y. Wang, V. Pagadala, D. M. Mueller
Date
:
12 Aug 10 (Deposition) - 15 Sep 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1
Biol. Unit 1: A,B,C,D,E,F,G,H,I (1x)
Biol. Unit 2: J,K,L,M,N,O,P,Q,R (1x)
Biol. Unit 3: S,T,U,V,W,X,Y,Z,1 (1x)
Keywords
:
Atp Synthase, Atp Phosphatase, F1F0 Atpase, Atp Synthesis, Hydrolase, Adp, Po4, Mitochondria
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Arsenieva, J. Symersky, Y. Wang, V. Pagadala, D. M. Mueller
Crystal Structures Of Mutant Forms Of The Yeast F1 Atpase Reveal Two Modes Of Uncoupling.
J. Biol. Chem. V. 285 36561 2010
[
close entry info
]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
1c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
1d: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPd)
1e: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPe)
1f: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPf)
1g: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPg)
1h: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPh)
1i: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPi)
1j: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPj)
1k: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPk)
1l: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPl)
1m: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPm)
1n: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPn)
1o: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPo)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
5
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:173 , GLN A:174 , THR A:175 , GLY A:176 , LYS A:177 , THR A:178 , ALA A:179 , PHE A:359 , ARG A:364 , GLN A:432 , GLN A:434 , MG A:700
BINDING SITE FOR RESIDUE ANP A 600
02
AC2
SOFTWARE
THR A:178 , ANP A:600
BINDING SITE FOR RESIDUE MG A 700
03
AC3
SOFTWARE
GLN B:174 , THR B:175 , GLY B:176 , LYS B:177 , THR B:178 , ALA B:179 , PHE B:359 , ARG B:364 , GLN B:432 , GLN B:434 , MG B:700
BINDING SITE FOR RESIDUE ANP B 600
04
AC4
SOFTWARE
THR B:178 , ANP B:600
BINDING SITE FOR RESIDUE MG B 700
05
AC5
SOFTWARE
ARG C:173 , GLN C:174 , THR C:175 , GLY C:176 , LYS C:177 , THR C:178 , ALA C:179 , PHE C:359 , ARG C:364 , GLN C:432 , GLN C:434 , MG C:700 , TYR F:368
BINDING SITE FOR RESIDUE ANP C 600
06
AC6
SOFTWARE
THR C:178 , ANP C:600
BINDING SITE FOR RESIDUE MG C 700
07
AC7
SOFTWARE
ARG C:375 , ALA D:159 , GLY D:160 , VAL D:161 , GLY D:162 , LYS D:163 , THR D:164 , VAL D:165 , ARG D:190 , TYR D:345 , PHE D:418 , ALA D:421 , MG D:700
BINDING SITE FOR RESIDUE ANP D 600
08
AC8
SOFTWARE
THR D:164 , ARG D:190 , GLU D:193 , ANP D:600
BINDING SITE FOR RESIDUE MG D 700
09
AC9
SOFTWARE
ILE B:345 , SER B:346 , ARG B:375 , GLY F:158 , ALA F:159 , GLY F:160 , VAL F:161 , GLY F:162 , LYS F:163 , THR F:164 , VAL F:165 , GLU F:189 , ARG F:190 , TYR F:345 , PHE F:418 , ALA F:421 , PHE F:424 , MG F:700
BINDING SITE FOR RESIDUE ANP F 600
10
BC1
SOFTWARE
THR F:164 , ARG F:190 , GLU F:193 , ANP F:600
BINDING SITE FOR RESIDUE MG F 700
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_ATPG_YEAST_001 (S174I, chain G, )
2: VAR_ATPG_YEAST_002 (S275F, chain G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ATPG_YEAST_001
*
S
207
I
ATPG_YEAST
---
---
G
S
174
I
2
UniProt
VAR_ATPG_YEAST_002
*
S
308
F
ATPG_YEAST
---
---
G
S
275
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
1: ATPASE_GAMMA (G:263-276)
2: ATPASE_ALPHA_BETA (D:346-355,E:346-355,F:346-355)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_YEAST
296-309
1
G:263-276
-
-
2
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_YEAST
379-388
3
D:346-355
E:346-355
F:346-355
-
-
-
-
-
-
ATPA_YEAST
400-409
3
A:365-374
B:365-374
C:365-374
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 29)
Info
All SCOP Domains
1a: SCOP_d3oehd3 (D:358-475)
1b: SCOP_d3oehe3 (E:358-475)
1c: SCOP_d3oehf3 (F:358-475)
1d: SCOP_d3oehm3 (M:358-475)
1e: SCOP_d3oehn3 (N:358-475)
1f: SCOP_d3oeho3 (O:358-474)
1g: SCOP_d3oehv3 (V:358-475)
1h: SCOP_d3oehw3 (W:358-474)
1i: SCOP_d3oehx3 (X:358-475)
2a: SCOP_d3oehd1 (D:6-82)
2b: SCOP_d3oehe1 (E:8-82)
2c: SCOP_d3oehf1 (F:7-82)
2d: SCOP_d3oehm1 (M:6-82)
2e: SCOP_d3oehn1 (N:6-82)
2f: SCOP_d3oeho1 (O:7-82)
2g: SCOP_d3oehv1 (V:6-82)
2h: SCOP_d3oehw1 (W:8-82)
2i: SCOP_d3oehx1 (X:7-82)
3a: SCOP_d3oehd2 (D:83-357)
3b: SCOP_d3oehe2 (E:83-357)
3c: SCOP_d3oehf2 (F:83-357)
3d: SCOP_d3oehm2 (M:83-357)
3e: SCOP_d3oehn2 (N:83-357)
3f: SCOP_d3oeho2 (O:83-357)
3g: SCOP_d3oehv2 (V:83-357)
3h: SCOP_d3oehw2 (W:83-357)
3i: SCOP_d3oehx2 (X:83-357)
4a: SCOP_d3oehg_ (G:)
4b: SCOP_d3oehp_ (P:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Left-handed superhelix
(73)
Superfamily
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(6)
1a
d3oehd3
D:358-475
1b
d3oehe3
E:358-475
1c
d3oehf3
F:358-475
1d
d3oehm3
M:358-475
1e
d3oehn3
N:358-475
1f
d3oeho3
O:358-474
1g
d3oehv3
V:358-475
1h
d3oehw3
W:358-474
1i
d3oehx3
X:358-475
Class
:
All beta proteins
(24004)
Fold
:
Domain of alpha and beta subunits of F1 ATP synthase-like
(89)
Superfamily
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(6)
2a
d3oehd1
D:6-82
2b
d3oehe1
E:8-82
2c
d3oehf1
F:7-82
2d
d3oehm1
M:6-82
2e
d3oehn1
N:6-82
2f
d3oeho1
O:7-82
2g
d3oehv1
V:6-82
2h
d3oehw1
W:8-82
2i
d3oehx1
X:7-82
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
automated matches
(32)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(6)
3a
d3oehd2
D:83-357
3b
d3oehe2
E:83-357
3c
d3oehf2
F:83-357
3d
d3oehm2
M:83-357
3e
d3oehn2
N:83-357
3f
d3oeho2
O:83-357
3g
d3oehv2
V:83-357
3h
d3oehw2
W:83-357
3i
d3oehx2
X:83-357
Fold
:
Pyruvate kinase C-terminal domain-like
(59)
Superfamily
:
ATP synthase (F1-ATPase), gamma subunit
(29)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(6)
4a
d3oehg_
G:
4b
d3oehp_
P:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(6, 62)
Info
all PFAM domains
1a: PFAM_ATP_synt_ab_N_3oehU01 (U:26-94)
1b: PFAM_ATP_synt_ab_N_3oehU02 (U:26-94)
1c: PFAM_ATP_synt_ab_N_3oehU03 (U:26-94)
1d: PFAM_ATP_synt_ab_N_3oehU04 (U:26-94)
1e: PFAM_ATP_synt_ab_N_3oehU05 (U:26-94)
1f: PFAM_ATP_synt_ab_N_3oehU06 (U:26-94)
1g: PFAM_ATP_synt_ab_N_3oehU07 (U:26-94)
1h: PFAM_ATP_synt_ab_N_3oehU08 (U:26-94)
1i: PFAM_ATP_synt_ab_N_3oehU09 (U:26-94)
1j: PFAM_ATP_synt_ab_N_3oehX01 (X:13-80)
1k: PFAM_ATP_synt_ab_N_3oehX02 (X:13-80)
1l: PFAM_ATP_synt_ab_N_3oehX03 (X:13-80)
1m: PFAM_ATP_synt_ab_N_3oehX04 (X:13-80)
1n: PFAM_ATP_synt_ab_N_3oehX05 (X:13-80)
1o: PFAM_ATP_synt_ab_N_3oehX06 (X:13-80)
1p: PFAM_ATP_synt_ab_N_3oehX07 (X:13-80)
1q: PFAM_ATP_synt_ab_N_3oehX08 (X:13-80)
1r: PFAM_ATP_synt_ab_N_3oehX09 (X:13-80)
2a: PFAM_ATP_synt_ab_3oehU10 (U:150-374)
2b: PFAM_ATP_synt_ab_3oehU11 (U:150-374)
2c: PFAM_ATP_synt_ab_3oehU12 (U:150-374)
2d: PFAM_ATP_synt_ab_3oehU13 (U:150-374)
2e: PFAM_ATP_synt_ab_3oehU14 (U:150-374)
2f: PFAM_ATP_synt_ab_3oehU15 (U:150-374)
2g: PFAM_ATP_synt_ab_3oehU16 (U:150-374)
2h: PFAM_ATP_synt_ab_3oehU17 (U:150-374)
2i: PFAM_ATP_synt_ab_3oehU18 (U:150-374)
2j: PFAM_ATP_synt_ab_3oehX10 (X:136-355)
2k: PFAM_ATP_synt_ab_3oehX11 (X:136-355)
2l: PFAM_ATP_synt_ab_3oehX12 (X:136-355)
2m: PFAM_ATP_synt_ab_3oehX13 (X:136-355)
2n: PFAM_ATP_synt_ab_3oehX14 (X:136-355)
2o: PFAM_ATP_synt_ab_3oehX15 (X:136-355)
2p: PFAM_ATP_synt_ab_3oehX16 (X:136-355)
2q: PFAM_ATP_synt_ab_3oehX17 (X:136-355)
2r: PFAM_ATP_synt_ab_3oehX18 (X:136-355)
3a: PFAM_ATP_synt_3oehY01 (Y:1-275)
3b: PFAM_ATP_synt_3oehY02 (Y:1-275)
3c: PFAM_ATP_synt_3oehY03 (Y:1-275)
4a: PFAM_ATP_synt_DE_N_3oehQ01 (Q:12-90)
4b: PFAM_ATP_synt_DE_N_3oehQ02 (Q:12-90)
5a: PFAM_ATP_synt_Eps_3oehR01 (R:10-47)
5b: PFAM_ATP_synt_Eps_3oehR02 (R:10-47)
5c: PFAM_ATP_synt_Eps_3oehR03 (R:10-47)
6a: PFAM_ATP_synt_ab_C_3oehU19 (U:386-490)
6b: PFAM_ATP_synt_ab_C_3oehU20 (U:386-490)
6c: PFAM_ATP_synt_ab_C_3oehU21 (U:386-490)
6d: PFAM_ATP_synt_ab_C_3oehU22 (U:386-490)
6e: PFAM_ATP_synt_ab_C_3oehU23 (U:386-490)
6f: PFAM_ATP_synt_ab_C_3oehU24 (U:386-490)
6g: PFAM_ATP_synt_ab_C_3oehU25 (U:386-490)
6h: PFAM_ATP_synt_ab_C_3oehU26 (U:386-490)
6i: PFAM_ATP_synt_ab_C_3oehU27 (U:386-490)
6j: PFAM_ATP_synt_ab_C_3oehX19 (X:368-475)
6k: PFAM_ATP_synt_ab_C_3oehX20 (X:368-475)
6l: PFAM_ATP_synt_ab_C_3oehX21 (X:368-475)
6m: PFAM_ATP_synt_ab_C_3oehX22 (X:368-475)
6n: PFAM_ATP_synt_ab_C_3oehX23 (X:368-475)
6o: PFAM_ATP_synt_ab_C_3oehX24 (X:368-475)
6p: PFAM_ATP_synt_ab_C_3oehX25 (X:368-475)
6q: PFAM_ATP_synt_ab_C_3oehX26 (X:368-475)
6r: PFAM_ATP_synt_ab_C_3oehX27 (X:368-475)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HAS-barrel
(27)
Family
:
ATP-synt_ab_N
(27)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
1a
ATP-synt_ab_N-3oehU01
U:26-94
1b
ATP-synt_ab_N-3oehU02
U:26-94
1c
ATP-synt_ab_N-3oehU03
U:26-94
1d
ATP-synt_ab_N-3oehU04
U:26-94
1e
ATP-synt_ab_N-3oehU05
U:26-94
1f
ATP-synt_ab_N-3oehU06
U:26-94
1g
ATP-synt_ab_N-3oehU07
U:26-94
1h
ATP-synt_ab_N-3oehU08
U:26-94
1i
ATP-synt_ab_N-3oehU09
U:26-94
1j
ATP-synt_ab_N-3oehX01
X:13-80
1k
ATP-synt_ab_N-3oehX02
X:13-80
1l
ATP-synt_ab_N-3oehX03
X:13-80
1m
ATP-synt_ab_N-3oehX04
X:13-80
1n
ATP-synt_ab_N-3oehX05
X:13-80
1o
ATP-synt_ab_N-3oehX06
X:13-80
1p
ATP-synt_ab_N-3oehX07
X:13-80
1q
ATP-synt_ab_N-3oehX08
X:13-80
1r
ATP-synt_ab_N-3oehX09
X:13-80
Clan
:
P-loop_NTPase
(1112)
Family
:
ATP-synt_ab
(44)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
2a
ATP-synt_ab-3oehU10
U:150-374
2b
ATP-synt_ab-3oehU11
U:150-374
2c
ATP-synt_ab-3oehU12
U:150-374
2d
ATP-synt_ab-3oehU13
U:150-374
2e
ATP-synt_ab-3oehU14
U:150-374
2f
ATP-synt_ab-3oehU15
U:150-374
2g
ATP-synt_ab-3oehU16
U:150-374
2h
ATP-synt_ab-3oehU17
U:150-374
2i
ATP-synt_ab-3oehU18
U:150-374
2j
ATP-synt_ab-3oehX10
X:136-355
2k
ATP-synt_ab-3oehX11
X:136-355
2l
ATP-synt_ab-3oehX12
X:136-355
2m
ATP-synt_ab-3oehX13
X:136-355
2n
ATP-synt_ab-3oehX14
X:136-355
2o
ATP-synt_ab-3oehX15
X:136-355
2p
ATP-synt_ab-3oehX16
X:136-355
2q
ATP-synt_ab-3oehX17
X:136-355
2r
ATP-synt_ab-3oehX18
X:136-355
Clan
:
no clan defined [family: ATP-synt]
(22)
Family
:
ATP-synt
(22)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
3a
ATP-synt-3oehY01
Y:1-275
3b
ATP-synt-3oehY02
Y:1-275
3c
ATP-synt-3oehY03
Y:1-275
Clan
:
no clan defined [family: ATP-synt_DE_N]
(15)
Family
:
ATP-synt_DE_N
(15)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
4a
ATP-synt_DE_N-3oehQ01
Q:12-90
4b
ATP-synt_DE_N-3oehQ02
Q:12-90
Clan
:
no clan defined [family: ATP-synt_Eps]
(11)
Family
:
ATP-synt_Eps
(11)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(5)
5a
ATP-synt_Eps-3oehR01
R:10-47
5b
ATP-synt_Eps-3oehR02
R:10-47
5c
ATP-synt_Eps-3oehR03
R:10-47
Clan
:
no clan defined [family: ATP-synt_ab_C]
(32)
Family
:
ATP-synt_ab_C
(32)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
6a
ATP-synt_ab_C-3oehU19
U:386-490
6b
ATP-synt_ab_C-3oehU20
U:386-490
6c
ATP-synt_ab_C-3oehU21
U:386-490
6d
ATP-synt_ab_C-3oehU22
U:386-490
6e
ATP-synt_ab_C-3oehU23
U:386-490
6f
ATP-synt_ab_C-3oehU24
U:386-490
6g
ATP-synt_ab_C-3oehU25
U:386-490
6h
ATP-synt_ab_C-3oehU26
U:386-490
6i
ATP-synt_ab_C-3oehU27
U:386-490
6j
ATP-synt_ab_C-3oehX19
X:368-475
6k
ATP-synt_ab_C-3oehX20
X:368-475
6l
ATP-synt_ab_C-3oehX21
X:368-475
6m
ATP-synt_ab_C-3oehX22
X:368-475
6n
ATP-synt_ab_C-3oehX23
X:368-475
6o
ATP-synt_ab_C-3oehX24
X:368-475
6p
ATP-synt_ab_C-3oehX25
X:368-475
6q
ATP-synt_ab_C-3oehX26
X:368-475
6r
ATP-synt_ab_C-3oehX27
X:368-475
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