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3ODM
Biol. Unit 3
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (704 KB)
Biol.Unit 2 (707 KB)
Biol.Unit 3 (355 KB)
Biol.Unit 4 (358 KB)
Biol.Unit 5 (358 KB)
Biol.Unit 6 (358 KB)
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(1)
Title
:
ARCHAEAL-TYPE PHOSPHOENOLPYRUVATE CARBOXYLASE
Authors
:
P. W. Dunten
Date
:
11 Aug 10 (Deposition) - 02 Feb 11 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C,D,E (1x)
Biol. Unit 2: B,F,G,H (1x)
Biol. Unit 3: A,E (1x)
Biol. Unit 4: B,H (1x)
Biol. Unit 5: C,D (1x)
Biol. Unit 6: F,G (1x)
Keywords
:
Beta-Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Dharmarajan, J. L. Kraszewski, B. Mukhopadhyay, P. W. Dunten
Structure Of An Archaeal-Type Phosphoenolpyruvate Carboxylase Sensitive To Inhibition By Aspartate.
Proteins V. 79 1820 2011
(for further references see the
PDB file header
)
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: GOLD (I) CYANIDE ION (AUCa)
1aa: GOLD (I) CYANIDE ION (AUCaa)
1ab: GOLD (I) CYANIDE ION (AUCab)
1ac: GOLD (I) CYANIDE ION (AUCac)
1ad: GOLD (I) CYANIDE ION (AUCad)
1ae: GOLD (I) CYANIDE ION (AUCae)
1af: GOLD (I) CYANIDE ION (AUCaf)
1ag: GOLD (I) CYANIDE ION (AUCag)
1ah: GOLD (I) CYANIDE ION (AUCah)
1ai: GOLD (I) CYANIDE ION (AUCai)
1aj: GOLD (I) CYANIDE ION (AUCaj)
1b: GOLD (I) CYANIDE ION (AUCb)
1c: GOLD (I) CYANIDE ION (AUCc)
1d: GOLD (I) CYANIDE ION (AUCd)
1e: GOLD (I) CYANIDE ION (AUCe)
1f: GOLD (I) CYANIDE ION (AUCf)
1g: GOLD (I) CYANIDE ION (AUCg)
1h: GOLD (I) CYANIDE ION (AUCh)
1i: GOLD (I) CYANIDE ION (AUCi)
1j: GOLD (I) CYANIDE ION (AUCj)
1k: GOLD (I) CYANIDE ION (AUCk)
1l: GOLD (I) CYANIDE ION (AUCl)
1m: GOLD (I) CYANIDE ION (AUCm)
1n: GOLD (I) CYANIDE ION (AUCn)
1o: GOLD (I) CYANIDE ION (AUCo)
1p: GOLD (I) CYANIDE ION (AUCp)
1q: GOLD (I) CYANIDE ION (AUCq)
1r: GOLD (I) CYANIDE ION (AUCr)
1s: GOLD (I) CYANIDE ION (AUCs)
1t: GOLD (I) CYANIDE ION (AUCt)
1u: GOLD (I) CYANIDE ION (AUCu)
1v: GOLD (I) CYANIDE ION (AUCv)
1w: GOLD (I) CYANIDE ION (AUCw)
1x: GOLD (I) CYANIDE ION (AUCx)
1y: GOLD (I) CYANIDE ION (AUCy)
1z: GOLD (I) CYANIDE ION (AUCz)
2a: MALONATE ION (MLIa)
2b: MALONATE ION (MLIb)
2c: MALONATE ION (MLIc)
2d: MALONATE ION (MLId)
2e: MALONATE ION (MLIe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AUC
8
Ligand/Ion
GOLD (I) CYANIDE ION
2
MLI
2
Ligand/Ion
MALONATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC8 (SOFTWARE)
6: CC6 (SOFTWARE)
7: CC7 (SOFTWARE)
8: CC8 (SOFTWARE)
9: CC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:10 , HIS A:11 , MET A:46 , ASP A:48 , ARG A:344
BINDING SITE FOR RESIDUE AUC A 607
2
AC2
SOFTWARE
CYS A:5
BINDING SITE FOR RESIDUE AUC A 608
3
AC3
SOFTWARE
GLY A:38 , LEU A:40 , GLU A:279
BINDING SITE FOR RESIDUE AUC A 624
4
AC5
SOFTWARE
ASP A:36 , LYS A:37 , GLN H:423 , LEU H:430 , ARG H:437 , ILE H:474 , ASN H:476
BINDING SITE FOR RESIDUE AUC A 631
5
AC8
SOFTWARE
HIS A:11 , ARG A:82 , ALA A:199 , ARG A:200 , SER A:201 , GLY A:239 , GLN A:270
BINDING SITE FOR RESIDUE MLI A 901
6
CC6
SOFTWARE
CYS E:5 , LYS E:290
BINDING SITE FOR RESIDUE AUC E 605
7
CC7
SOFTWARE
GLN E:10 , HIS E:11 , MET E:46 , ASP E:48 , ARG E:344 , ARG E:390
BINDING SITE FOR RESIDUE AUC E 606
8
CC8
SOFTWARE
GLY E:38 , LEU E:40 , GLU E:279
BINDING SITE FOR RESIDUE AUC E 619
9
CC9
SOFTWARE
HIS E:11 , ARG E:82 , ALA E:199 , ARG E:200 , SER E:201 , ASP E:202 , GLY E:239 , GLN E:270
BINDING SITE FOR RESIDUE MLI E 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_PEPcase_2_3odmH01 (H:3-537)
1b: PFAM_PEPcase_2_3odmH02 (H:3-537)
1c: PFAM_PEPcase_2_3odmH03 (H:3-537)
1d: PFAM_PEPcase_2_3odmH04 (H:3-537)
1e: PFAM_PEPcase_2_3odmH05 (H:3-537)
1f: PFAM_PEPcase_2_3odmH06 (H:3-537)
1g: PFAM_PEPcase_2_3odmH07 (H:3-537)
1h: PFAM_PEPcase_2_3odmH08 (H:3-537)
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Clans
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)
(
)
Clan
:
PK_TIM
(63)
Family
:
PEPcase_2
(1)
Clostridium perfringens
(1)
1a
PEPcase_2-3odmH01
H:3-537
1b
PEPcase_2-3odmH02
H:3-537
1c
PEPcase_2-3odmH03
H:3-537
1d
PEPcase_2-3odmH04
H:3-537
1e
PEPcase_2-3odmH05
H:3-537
1f
PEPcase_2-3odmH06
H:3-537
1g
PEPcase_2-3odmH07
H:3-537
1h
PEPcase_2-3odmH08
H:3-537
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (704 KB)
Header - Biol.Unit 1
Biol.Unit 2 (707 KB)
Header - Biol.Unit 2
Biol.Unit 3 (355 KB)
Header - Biol.Unit 3
Biol.Unit 4 (358 KB)
Header - Biol.Unit 4
Biol.Unit 5 (358 KB)
Header - Biol.Unit 5
Biol.Unit 6 (358 KB)
Header - Biol.Unit 6
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