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3ODM
Asym. Unit
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (704 KB)
Biol.Unit 2 (707 KB)
Biol.Unit 3 (355 KB)
Biol.Unit 4 (358 KB)
Biol.Unit 5 (358 KB)
Biol.Unit 6 (358 KB)
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(1)
Title
:
ARCHAEAL-TYPE PHOSPHOENOLPYRUVATE CARBOXYLASE
Authors
:
P. W. Dunten
Date
:
11 Aug 10 (Deposition) - 02 Feb 11 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C,D,E (1x)
Biol. Unit 2: B,F,G,H (1x)
Biol. Unit 3: A,E (1x)
Biol. Unit 4: B,H (1x)
Biol. Unit 5: C,D (1x)
Biol. Unit 6: F,G (1x)
Keywords
:
Beta-Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Dharmarajan, J. L. Kraszewski, B. Mukhopadhyay, P. W. Dunten
Structure Of An Archaeal-Type Phosphoenolpyruvate Carboxylase Sensitive To Inhibition By Aspartate.
Proteins V. 79 1820 2011
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 41)
Info
All Hetero Components
1a: GOLD (I) CYANIDE ION (AUCa)
1aa: GOLD (I) CYANIDE ION (AUCaa)
1ab: GOLD (I) CYANIDE ION (AUCab)
1ac: GOLD (I) CYANIDE ION (AUCac)
1ad: GOLD (I) CYANIDE ION (AUCad)
1ae: GOLD (I) CYANIDE ION (AUCae)
1af: GOLD (I) CYANIDE ION (AUCaf)
1ag: GOLD (I) CYANIDE ION (AUCag)
1ah: GOLD (I) CYANIDE ION (AUCah)
1ai: GOLD (I) CYANIDE ION (AUCai)
1aj: GOLD (I) CYANIDE ION (AUCaj)
1b: GOLD (I) CYANIDE ION (AUCb)
1c: GOLD (I) CYANIDE ION (AUCc)
1d: GOLD (I) CYANIDE ION (AUCd)
1e: GOLD (I) CYANIDE ION (AUCe)
1f: GOLD (I) CYANIDE ION (AUCf)
1g: GOLD (I) CYANIDE ION (AUCg)
1h: GOLD (I) CYANIDE ION (AUCh)
1i: GOLD (I) CYANIDE ION (AUCi)
1j: GOLD (I) CYANIDE ION (AUCj)
1k: GOLD (I) CYANIDE ION (AUCk)
1l: GOLD (I) CYANIDE ION (AUCl)
1m: GOLD (I) CYANIDE ION (AUCm)
1n: GOLD (I) CYANIDE ION (AUCn)
1o: GOLD (I) CYANIDE ION (AUCo)
1p: GOLD (I) CYANIDE ION (AUCp)
1q: GOLD (I) CYANIDE ION (AUCq)
1r: GOLD (I) CYANIDE ION (AUCr)
1s: GOLD (I) CYANIDE ION (AUCs)
1t: GOLD (I) CYANIDE ION (AUCt)
1u: GOLD (I) CYANIDE ION (AUCu)
1v: GOLD (I) CYANIDE ION (AUCv)
1w: GOLD (I) CYANIDE ION (AUCw)
1x: GOLD (I) CYANIDE ION (AUCx)
1y: GOLD (I) CYANIDE ION (AUCy)
1z: GOLD (I) CYANIDE ION (AUCz)
2a: MALONATE ION (MLIa)
2b: MALONATE ION (MLIb)
2c: MALONATE ION (MLIc)
2d: MALONATE ION (MLId)
2e: MALONATE ION (MLIe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AUC
36
Ligand/Ion
GOLD (I) CYANIDE ION
2
MLI
5
Ligand/Ion
MALONATE ION
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:10 , HIS A:11 , MET A:46 , ASP A:48 , ARG A:344
BINDING SITE FOR RESIDUE AUC A 607
02
AC2
SOFTWARE
CYS A:5
BINDING SITE FOR RESIDUE AUC A 608
03
AC3
SOFTWARE
GLY A:38 , LEU A:40 , GLU A:279
BINDING SITE FOR RESIDUE AUC A 624
04
AC4
SOFTWARE
MET B:144 , MET H:144
BINDING SITE FOR RESIDUE AUC B 630
05
AC5
SOFTWARE
ASP A:36 , LYS A:37 , GLN H:423 , LEU H:430 , ARG H:437 , ILE H:474 , ASN H:476
BINDING SITE FOR RESIDUE AUC A 631
06
AC6
SOFTWARE
MET C:144 , MET D:144
BINDING SITE FOR RESIDUE AUC C 635
07
AC7
SOFTWARE
MET F:144 , MET G:144
BINDING SITE FOR RESIDUE AUC F 637
08
AC8
SOFTWARE
HIS A:11 , ARG A:82 , ALA A:199 , ARG A:200 , SER A:201 , GLY A:239 , GLN A:270
BINDING SITE FOR RESIDUE MLI A 901
09
AC9
SOFTWARE
CYS B:5 , GLU B:43 , LYS B:290
BINDING SITE FOR RESIDUE AUC B 609
10
BC1
SOFTWARE
GLN B:10 , HIS B:11 , ASP B:48 , ARG B:82 , ARG B:344
BINDING SITE FOR RESIDUE AUC B 610
11
BC2
SOFTWARE
LYS B:30 , GLY B:38 , LEU B:40 , GLU B:279
BINDING SITE FOR RESIDUE AUC B 622
12
BC3
SOFTWARE
HIS B:284
BINDING SITE FOR RESIDUE AUC B 638
13
BC4
SOFTWARE
HIS B:11 , ARG B:82 , MET B:197
BINDING SITE FOR RESIDUE AUC B 640
14
BC5
SOFTWARE
LYS C:2 , CYS C:5 , LYS C:290
BINDING SITE FOR RESIDUE AUC C 601
15
BC6
SOFTWARE
THR C:9 , GLN C:10 , HIS C:11 , MET C:46 , ASP C:48 , ARG C:344
BINDING SITE FOR RESIDUE AUC C 602
16
BC7
SOFTWARE
LYS C:30 , GLY C:38 , LEU C:40 , GLU C:279
BINDING SITE FOR RESIDUE AUC C 621
17
BC8
SOFTWARE
HIS C:284
BINDING SITE FOR RESIDUE AUC C 634
18
BC9
SOFTWARE
HIS C:11 , ARG C:82 , ALA C:199 , SER C:201 , GLY C:239
BINDING SITE FOR RESIDUE MLI C 901
19
CC1
SOFTWARE
THR D:9 , GLN D:10 , HIS D:11 , ASP D:48 , ARG D:344
BINDING SITE FOR RESIDUE AUC D 603
20
CC2
SOFTWARE
CYS D:5 , LYS D:290
BINDING SITE FOR RESIDUE AUC D 604
21
CC3
SOFTWARE
LYS D:30 , GLY D:38 , LEU D:40 , GLU D:279
BINDING SITE FOR RESIDUE AUC D 618
22
CC4
SOFTWARE
HIS D:284
BINDING SITE FOR RESIDUE AUC D 640
23
CC5
SOFTWARE
HIS D:11 , ARG D:82 , ALA D:199 , ARG D:200 , SER D:201 , ASP D:202 , GLY D:239
BINDING SITE FOR RESIDUE MLI D 901
24
CC6
SOFTWARE
CYS E:5 , LYS E:290
BINDING SITE FOR RESIDUE AUC E 605
25
CC7
SOFTWARE
GLN E:10 , HIS E:11 , MET E:46 , ASP E:48 , ARG E:344 , ARG E:390
BINDING SITE FOR RESIDUE AUC E 606
26
CC8
SOFTWARE
GLY E:38 , LEU E:40 , GLU E:279
BINDING SITE FOR RESIDUE AUC E 619
27
CC9
SOFTWARE
HIS E:11 , ARG E:82 , ALA E:199 , ARG E:200 , SER E:201 , ASP E:202 , GLY E:239 , GLN E:270
BINDING SITE FOR RESIDUE MLI E 901
28
DC1
SOFTWARE
CYS F:5 , LYS F:290
BINDING SITE FOR RESIDUE AUC F 613
29
DC2
SOFTWARE
GLN F:10 , HIS F:11 , ASP F:48 , ARG F:344 , ARG F:390
BINDING SITE FOR RESIDUE AUC F 614
30
DC3
SOFTWARE
LYS F:30 , GLY F:38 , LEU F:40 , GLU F:279
BINDING SITE FOR RESIDUE AUC F 620
31
DC4
SOFTWARE
HIS F:284
BINDING SITE FOR RESIDUE AUC F 627
32
DC5
SOFTWARE
HIS F:11 , ARG F:82 , MET F:197
BINDING SITE FOR RESIDUE AUC F 641
33
DC6
SOFTWARE
GLN G:10 , HIS G:11 , MET G:46 , ASP G:48 , ARG G:344
BINDING SITE FOR RESIDUE AUC G 615
34
DC7
SOFTWARE
CYS G:5 , LYS G:290
BINDING SITE FOR RESIDUE AUC G 616
35
DC8
SOFTWARE
GLY G:38 , LEU G:40 , GLU G:279
BINDING SITE FOR RESIDUE AUC G 626
36
DC9
SOFTWARE
HIS H:11 , MET H:46 , ASP H:48 , ARG H:344
BINDING SITE FOR RESIDUE AUC H 611
37
EC1
SOFTWARE
CYS H:5 , GLU H:43 , LYS H:290
BINDING SITE FOR RESIDUE AUC H 612
38
EC2
SOFTWARE
LYS H:30 , GLY H:38 , LEU H:40 , GLU H:279
BINDING SITE FOR RESIDUE AUC H 617
39
EC3
SOFTWARE
HIS H:284
BINDING SITE FOR RESIDUE AUC H 629
40
EC4
SOFTWARE
HIS H:11 , ARG H:82 , ALA H:199 , ARG H:200 , SER H:201 , ASP H:202
BINDING SITE FOR RESIDUE MLI H 901
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_PEPcase_2_3odmH01 (H:3-537)
1b: PFAM_PEPcase_2_3odmH02 (H:3-537)
1c: PFAM_PEPcase_2_3odmH03 (H:3-537)
1d: PFAM_PEPcase_2_3odmH04 (H:3-537)
1e: PFAM_PEPcase_2_3odmH05 (H:3-537)
1f: PFAM_PEPcase_2_3odmH06 (H:3-537)
1g: PFAM_PEPcase_2_3odmH07 (H:3-537)
1h: PFAM_PEPcase_2_3odmH08 (H:3-537)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PK_TIM
(63)
Family
:
PEPcase_2
(1)
Clostridium perfringens
(1)
1a
PEPcase_2-3odmH01
H:3-537
1b
PEPcase_2-3odmH02
H:3-537
1c
PEPcase_2-3odmH03
H:3-537
1d
PEPcase_2-3odmH04
H:3-537
1e
PEPcase_2-3odmH05
H:3-537
1f
PEPcase_2-3odmH06
H:3-537
1g
PEPcase_2-3odmH07
H:3-537
1h
PEPcase_2-3odmH08
H:3-537
[
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]
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Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (704 KB)
Header - Biol.Unit 1
Biol.Unit 2 (707 KB)
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Biol.Unit 3 (355 KB)
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Biol.Unit 4 (358 KB)
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