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3ODA
Biol. Unit 4
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Asym.Unit (164 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (42 KB)
Biol.Unit 3 (41 KB)
Biol.Unit 4 (42 KB)
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(1)
Title
:
HUMAN PARP-1 ZINC FINGER 1 (ZN1) BOUND TO DNA
Authors
:
J. M. Pascal, M. -F. Langelier
Date
:
11 Aug 10 (Deposition) - 12 Jan 11 (Release) - 08 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.64
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,I,J (1x)
Biol. Unit 2: C,D,K,L (1x)
Biol. Unit 3: E,F,M,N (1x)
Biol. Unit 4: G,H,O,P (1x)
Keywords
:
Protein-Dna Complex, Parp Zinc Finger, Dna Binding Protein-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. F. Langelier, J. L. Planck, S. Roy, J. M. Pascal
Crystal Structures Of Poly(Adp-Ribose) Polymerase-1 (Parp-1 Zinc Fingers Bound To Dna: Structural And Functional Insights Into Dna-Dependent Parp-1 Activity.
J. Biol. Chem. V. 286 10690 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
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Sites
(2, 2)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
CYS G:21 , CYS G:24 , HIS G:53 , CYS G:56
BINDING SITE FOR RESIDUE ZN G 200
2
AC8
SOFTWARE
CYS H:21 , CYS H:24 , HIS H:53 , CYS H:56
BINDING SITE FOR RESIDUE ZN H 200
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_050460 (F54L, chain G/H, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050460
F
54
L
PARP1_HUMAN
Polymorphism
3738708
G/H
F
54
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PARP_ZN_FINGER_2 (G:9-91,H:9-92|-)
2: PARP_ZN_FINGER_1 (G:21-56,H:21-56|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PARP_ZN_FINGER_2
PS50064
Poly(ADP-ribose) polymerase zinc finger domain profile.
PARP1_HUMAN
9-93
113-203
2
-
-
-
-
-
-
G:9-91
H:9-92
-
2
PARP_ZN_FINGER_1
PS00347
Poly(ADP-ribose) polymerase zinc finger domain signature.
PARP1_HUMAN
21-56
125-162
2
-
-
-
-
-
-
G:21-56
H:21-56
-
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Exons
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SCOP Domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_zf_PARP_3odaH01 (H:12-90)
1b: PFAM_zf_PARP_3odaH02 (H:12-90)
1c: PFAM_zf_PARP_3odaH03 (H:12-90)
1d: PFAM_zf_PARP_3odaH04 (H:12-90)
1e: PFAM_zf_PARP_3odaH05 (H:12-90)
1f: PFAM_zf_PARP_3odaH06 (H:12-90)
1g: PFAM_zf_PARP_3odaH07 (H:12-90)
1h: PFAM_zf_PARP_3odaH08 (H:12-90)
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Clan
:
no clan defined [family: zf-PARP]
(8)
Family
:
zf-PARP
(8)
Homo sapiens (Human)
(7)
1a
zf-PARP-3odaH01
H:12-90
1b
zf-PARP-3odaH02
H:12-90
1c
zf-PARP-3odaH03
H:12-90
1d
zf-PARP-3odaH04
H:12-90
1e
zf-PARP-3odaH05
H:12-90
1f
zf-PARP-3odaH06
H:12-90
1g
zf-PARP-3odaH07
H:12-90
1h
zf-PARP-3odaH08
H:12-90
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Asym.Unit (164 KB)
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