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3OCF
Asym. Unit
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Asym.Unit (536 KB)
Biol.Unit 1 (528 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FUMARATE LYASE:DELTA CRYSTALLIN FROM BRUCELLA MELITENSIS IN NATIVE FORM
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
09 Aug 10 (Deposition) - 18 Aug 10 (Release) - 25 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Fumarate Lyase, Fumarase, Brucellosis, Orchitis, Epididymitis, Mastitis, Dehydration Of Fumarate To Malate, Kreb'S Cycle, Citric Acid Cycle, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Lyase
(Keyword Search:
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Reference
:
T. E. Edwards, T. L. Arakaki, B. Sankaran
Crystal Structure Of Fumarate Lyase:Delta Crystallin From Brucella Melitensis In Native Form
To Be Published
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
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No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE C:41 , PRO C:42 , ALA C:43
BINDING SITE FOR RESIDUE CL C 458
2
AC2
SOFTWARE
ILE D:41 , PRO D:42 , ALA D:43 , ARG D:373
BINDING SITE FOR RESIDUE CL D 458
3
AC3
SOFTWARE
ILE B:41 , PRO B:42 , ALA B:43 , ARG B:373
BINDING SITE FOR RESIDUE CL B 458
4
AC4
SOFTWARE
ILE A:41 , PRO A:42 , ALA A:43 , ARG A:373 , HOH A:581
BINDING SITE FOR RESIDUE CL A 458
5
AC5
SOFTWARE
GLY D:10 , GLU D:11 , HOH D:540 , HOH D:557
BINDING SITE FOR RESIDUE EDO D 459
6
AC6
SOFTWARE
GLN B:338 , EDO B:459 , ASN D:342 , TYR D:366 , ASN D:367 , SER D:370
BINDING SITE FOR RESIDUE EDO D 460
7
AC7
SOFTWARE
ASN B:342 , TYR B:366 , ASN B:367 , SER B:370 , GLN D:338 , EDO D:460
BINDING SITE FOR RESIDUE EDO B 459
8
AC8
SOFTWARE
GLN A:338 , ASN A:342 , TYR A:366 , ASN A:367 , SER A:370 , EDO A:460 , GLN C:338
BINDING SITE FOR RESIDUE EDO A 459
9
AC9
SOFTWARE
GLN A:338 , EDO A:459 , ASN C:342 , TYR C:366 , ASN C:367 , SER C:370
BINDING SITE FOR RESIDUE EDO A 460
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ocfa_ (A:)
1b: SCOP_d3ocfb_ (B:)
1c: SCOP_d3ocfc_ (C:)
1d: SCOP_d3ocfd_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
L-aspartase-like
(67)
Superfamily
:
L-aspartase-like
(67)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Brucella melitensis [TaxId: 359391]
(2)
1a
d3ocfa_
A:
1b
d3ocfb_
B:
1c
d3ocfc_
C:
1d
d3ocfd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_FumaraseC_C_3ocfD01 (D:407-440)
1b: PFAM_FumaraseC_C_3ocfD02 (D:407-440)
1c: PFAM_FumaraseC_C_3ocfD03 (D:407-440)
1d: PFAM_FumaraseC_C_3ocfD04 (D:407-440)
2a: PFAM_Lyase_1_3ocfD05 (D:10-341)
2b: PFAM_Lyase_1_3ocfD06 (D:10-341)
2c: PFAM_Lyase_1_3ocfD07 (D:10-341)
2d: PFAM_Lyase_1_3ocfD08 (D:10-341)
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Clans
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Organisms
(
)
(
)
Clan
:
no clan defined [family: FumaraseC_C]
(10)
Family
:
FumaraseC_C
(10)
Brucella abortus (strain 2308)
(1)
1a
FumaraseC_C-3ocfD01
D:407-440
1b
FumaraseC_C-3ocfD02
D:407-440
1c
FumaraseC_C-3ocfD03
D:407-440
1d
FumaraseC_C-3ocfD04
D:407-440
Clan
:
no clan defined [family: Lyase_1]
(27)
Family
:
Lyase_1
(27)
Brucella abortus (strain 2308)
(1)
2a
Lyase_1-3ocfD05
D:10-341
2b
Lyase_1-3ocfD06
D:10-341
2c
Lyase_1-3ocfD07
D:10-341
2d
Lyase_1-3ocfD08
D:10-341
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Asymmetric Unit 1
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