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3OBX
Asym. Unit
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Asym.Unit (31 KB)
Biol.Unit 1 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TSG101 UEV DOMAIN IN COMPLEX WITH A HIV-1 GAG P7A MUTANT PEPTIDE
Authors
:
Y. J. Im, J. H. Hurley
Date
:
09 Aug 10 (Deposition) - 01 Dec 10 (Release) - 15 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein Tranport, Ubiquitin, Hiv-1 Gag, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. J. Im, L. Kuo, X. Ren, P. V. Burgos, X. Z. Zhao, F. Liu, T. R. Burke, J. S. Bonifacino, E. O. Freed, J. H. Hurley
Crystallographic And Functional Analysis Of The Escrt-I /Hiv-1 Gag Ptap Interaction.
Structure V. 18 1536 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (A:3-14)
Exon 1.2 (A:15-43)
Exon 1.3 (A:43-65 (gaps))
Exon 1.4 (A:65-119)
Exon 1.5 (A:120-145)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000251968
1a
ENSE00001129196
chr11:
18548489-18548322
168
TS101_HUMAN
1-14
14
1
A:3-14
12
1.2
ENST00000251968
2
ENSE00001106778
chr11:
18541150-18541066
85
TS101_HUMAN
15-43
29
1
A:15-43
29
1.3
ENST00000251968
3
ENSE00001615198
chr11:
18537711-18537646
66
TS101_HUMAN
43-65
23
1
A:43-65 (gaps)
23
1.4
ENST00000251968
4
ENSE00001604894
chr11:
18536388-18536225
164
TS101_HUMAN
65-119
55
1
A:65-119
55
1.5
ENST00000251968
5
ENSE00001631564
chr11:
18531212-18531089
124
TS101_HUMAN
120-161
42
1
A:120-145
26
1.6
ENST00000251968
6
ENSE00001601359
chr11:
18528470-18528404
67
TS101_HUMAN
161-183
23
0
-
-
1.7b
ENST00000251968
7b
ENSE00001106774
chr11:
18524124-18524033
92
TS101_HUMAN
183-214
32
0
-
-
1.8
ENST00000251968
8
ENSE00001106772
chr11:
18505619-18505417
203
TS101_HUMAN
214-281
68
0
-
-
1.9
ENST00000251968
9
ENSE00001106782
chr11:
18503416-18503177
240
TS101_HUMAN
282-361
80
0
-
-
1.10a
ENST00000251968
10a
ENSE00001106781
chr11:
18502182-18501862
321
TS101_HUMAN
362-390
29
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d3obxa_ (A:)
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UEV domain
(15)
Protein domain
:
Tumor susceptibility gene 101 (TSG101)
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3obxa_
A:
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CATH Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_UEV_3obxA01 (A:21-141)
2a: PFAM_Gag_p6_3obxB01 (B:5-13)
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)
Clan
:
UBC
(69)
Family
:
UEV
(11)
Homo sapiens (Human)
(8)
1a
UEV-3obxA01
A:21-141
Clan
:
no clan defined [family: Gag_p6]
(6)
Family
:
Gag_p6
(6)
Human immunodeficiency virus 1
(4)
2a
Gag_p6-3obxB01
B:5-13
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Asymmetric Unit 1
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Asym.Unit (31 KB)
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