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3OBB
Biol. Unit 1
Info
Asym.Unit (100 KB)
Biol.Unit 1 (366 KB)
Biol.Unit 2 (185 KB)
Biol.Unit 3 (185 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A POSSIBLE 3-HYDROXYISOBUTYRATE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA PAO1
Authors
:
K. Tan, A. U. Singer, E. Evdokimova, M. Kudritska, A. Savchenko, A. M. Ed A. F. Yakunin, A. Joachimiak, Midwest Center For Structural Geno (Mcsg)
Date
:
06 Aug 10 (Deposition) - 18 Aug 10 (Release) - 01 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Biol. Unit 2: A (2x)
Biol. Unit 3: A (2x)
Keywords
:
Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Oxidoreductase, Alpha-Beta, Serine Dehydrogenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Tchigvintsev, A. Singer, G. Brown, R. Flick, E. Evdokimova, K. Tan, C. F. Gonzalez, A. Savchenko, A. F. Yakunin
Biochemical And Structural Studies Of Uncharacterized Protein Pa0743 From Pseudomonas Aeruginosa Revealed Nad+-Dependent L-Serine Dehydrogenase.
J. Biol. Chem. V. 287 1874 2012
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Hetero Components
(4, 76)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: 1,2-ETHANEDIOL (EDOa)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
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No.
Name
Count
Type
Full Name
1
ACT
12
Ligand/Ion
ACETATE ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
EPE
4
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
MSE
56
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:11 , MSE A:12 , PHE A:239
BINDING SITE FOR RESIDUE ACT A 402
2
AC2
SOFTWARE
ASP A:38 , GLN A:242 , LEU A:276 , HOH A:551 , HOH A:555
BINDING SITE FOR RESIDUE ACT A 403
3
AC3
SOFTWARE
ARG A:233 , SER A:236 , GLY A:237 , GLY A:238
BINDING SITE FOR RESIDUE ACT A 404
4
AC4
SOFTWARE
GLY A:10 , HIS A:11
BINDING SITE FOR RESIDUE EDO A 405
5
AC5
SOFTWARE
VAL A:121 , GLY A:123 , GLY A:124 , LYS A:171 , ASN A:175 , TRP A:214 , TYR A:219 , PHE A:239 , ASP A:247 , HOH A:570
BINDING SITE FOR RESIDUE EPE A 299
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: 3_HYDROXYISOBUT_DH (A:6-19)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
3_HYDROXYISOBUT_DH
PS00895
3-hydroxyisobutyrate dehydrogenase signature.
SERDH_PSEAE
6-19
4
A:6-19
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3obba1 (A:163-296)
2a: SCOP_d3obba2 (A:1-162)
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Classes
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
(13)
Protein domain
:
Hydroxyisobutyrate dehydrogenase
(5)
Pseudomonas aeruginosa [TaxId: 287]
(2)
1a
d3obba1
A:163-296
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
6-phosphogluconate dehydrogenase-like, N-terminal domain
(69)
Protein domain
:
Hydroxyisobutyrate dehydrogenase
(5)
Pseudomonas aeruginosa [TaxId: 287]
(2)
2a
d3obba2
A:1-162
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CATH Domains
(0, 0 ; only for superseded entry 3CUM: 1,1)
Info
all CATH domains
1a: CATH_3cumA01 ()
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (100 KB)
Header - Asym.Unit
Biol.Unit 1 (366 KB)
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