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3O8V
Asym. Unit
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Asym.Unit (22 KB)
Biol.Unit 1 (18 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TUDOR DOMAINS FROM FXR1
Authors
:
R. Lam, Y. H. Guo, M. Adams-Cioaba, C. B. Bian, F. Mackenzie, C. Bountra, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, J. Min, Stru Genomics Consortium (Sgc)
Date
:
03 Aug 10 (Deposition) - 18 Aug 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Structural Genomics Consortium, Sgc, Tandem Tudor, Protein Binding, Rna-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Adams-Cioaba, Y. Guo, C. Bian, M. F. Amaya, R. Lam, G. A. Wasney, M. Vedadi, C. Xu, J. Min
Structural Studies Of The Tandem Tudor Domains Of Fragile X Mental Retardation Related Proteins Fxr1 And Fxr2.
Plos One V. 5 E1355 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AGENET_LIKE (A:3-49|A:62-114)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AGENET_LIKE
PS51641
Agenet-like domain profile.
FXR1_HUMAN
4-50
63-115
2
A:3-49
A:62-114
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Exons
(5, 5)
Info
All Exons
Exon 1.3a (A:3-16)
Exon 1.8b (A:17-34)
Exon 1.9b (A:34-65 (gaps))
Exon 1.10a (A:66-89 (gaps))
Exon 1.11 (A:90-121 (gaps))
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.8b
3: Boundary 1.8b/1.9b
4: Boundary 1.9b/1.10a
5: Boundary 1.10a/1.11
6: Boundary 1.11/1.12c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000357559
3a
ENSE00001862123
chr3:
180630090-180630524
435
FXR1_HUMAN
1-17
17
1
A:3-16
14
1.8b
ENST00000357559
8b
ENSE00001730554
chr3:
180651122-180651174
53
FXR1_HUMAN
18-35
18
1
A:17-34
18
1.9b
ENST00000357559
9b
ENSE00001708989
chr3:
180652926-180653019
94
FXR1_HUMAN
35-66
32
1
A:34-65 (gaps)
32
1.10a
ENST00000357559
10a
ENSE00001639975
chr3:
180665653-180665724
72
FXR1_HUMAN
67-90
24
1
A:66-89 (gaps)
24
1.11
ENST00000357559
11
ENSE00000780635
chr3:
180666135-180666283
149
FXR1_HUMAN
91-140
50
1
A:90-121 (gaps)
32
1.12c
ENST00000357559
12c
ENSE00000780636
chr3:
180666509-180666602
94
FXR1_HUMAN
140-171
32
0
-
-
1.13d
ENST00000357559
13d
ENSE00000780637
chr3:
180667015-180667131
117
FXR1_HUMAN
172-210
39
0
-
-
1.14a
ENST00000357559
14a
ENSE00000780638
chr3:
180669086-180669256
171
FXR1_HUMAN
211-267
57
0
-
-
1.15a
ENST00000357559
15a
ENSE00000780639
chr3:
180671550-180671628
79
FXR1_HUMAN
268-294
27
0
-
-
1.16c
ENST00000357559
16c
ENSE00000780640
chr3:
180675607-180675716
110
FXR1_HUMAN
294-330
37
0
-
-
1.17
ENST00000357559
17
ENSE00000780641
chr3:
180679256-180679342
87
FXR1_HUMAN
331-359
29
0
-
-
1.18a
ENST00000357559
18a
ENSE00000795164
chr3:
180680671-180680728
58
FXR1_HUMAN
360-379
20
0
-
-
1.18d
ENST00000357559
18d
ENSE00001127668
chr3:
180680816-180680878
63
FXR1_HUMAN
379-400
22
0
-
-
1.19a
ENST00000357559
19a
ENSE00000780643
chr3:
180685839-180686042
204
FXR1_HUMAN
400-468
69
0
-
-
1.20a
ENST00000357559
20a
ENSE00000780644
chr3:
180687946-180688146
201
FXR1_HUMAN
468-535
68
0
-
-
1.22
ENST00000357559
22
ENSE00000780645
chr3:
180693101-180693192
92
FXR1_HUMAN
535-565
31
0
-
-
1.23i
ENST00000357559
23i
ENSE00001920434
chr3:
180693910-180694950
1041
FXR1_HUMAN
566-621
56
0
-
-
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SCOP Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Agenet_3o8vA01 (A:59-119)
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Clans
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Clan
:
Tudor
(88)
Family
:
Agenet
(2)
Homo sapiens (Human)
(2)
1a
Agenet-3o8vA01
A:59-119
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Asymmetric Unit 1
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