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3O6Z
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (132 KB)
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(1)
Title
:
STRUCTURE OF THE D152A E.COLI GDP-MANNOSE HYDROLASE (YFFH) IN COMPLEX WITH MG++
Authors
:
L. M. Amzel, S. B. Gabelli, A. N. Boto
Date
:
29 Jul 10 (Deposition) - 11 May 11 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nudix, Gdp_mannose, Hydrolase, Biofilm
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. N. Boto, W. Xu, J. Jakoncic, A. Pannuri, T. Romeo, M. J. Bessman, S. B. Gabelli, L. M. Amzel
Structural Studies Of The Nudix Gdp-Mannose Hydrolase From E. Coli Reveals A New Motif For Mannose Recognition.
Proteins V. 79 2455 2011
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:85 , GLU A:104 , HOH A:311 , HOH A:324 , HOH A:417
BINDING SITE FOR RESIDUE MG A 202
2
AC2
SOFTWARE
GLU B:100 , GLU B:104 , GLU B:151 , MG B:202 , HOH B:229 , HOH B:414 , HOH B:415
BINDING SITE FOR RESIDUE MG B 201
3
AC3
SOFTWARE
ALA B:85 , GLU B:104 , GLU B:151 , MG B:201 , HOH B:214 , HOH B:240 , HOH B:347 , HOH B:414
BINDING SITE FOR RESIDUE MG B 202
4
AC4
SOFTWARE
ARG B:113
BINDING SITE FOR RESIDUE CL B 204
5
AC5
SOFTWARE
GLN B:4 , THR B:28
BINDING SITE FOR RESIDUE CL B 203
6
AC6
SOFTWARE
GLU B:94 , VAL B:95 , LYS B:99 , HOH B:327 , HOH B:350
BINDING SITE FOR RESIDUE PEG B 205
7
AC7
SOFTWARE
ARG B:64 , ILE B:81 , MET B:166 , GLU B:171
BINDING SITE FOR RESIDUE TRS B 206
8
AC8
SOFTWARE
ILE A:8 , ARG A:36 , ASP B:15 , THR B:19 , HIS B:21 , ASP B:43
BINDING SITE FOR RESIDUE PEG B 192
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NUDIX (A:43-180,B:43-180)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUDIX
PS51462
Nudix hydrolase domain profile.
NUDK_ECOLI
43-180
2
A:43-180
B:43-180
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3o6za_ (A:)
1b: SCOP_d3o6zb_ (B:)
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Classes
(
)
(
)
Folds
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)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nudix
(141)
Superfamily
:
Nudix
(141)
Family
:
MutT-like
(82)
Protein domain
:
ADP-ribose pyrophosphatase homologue YffH
(5)
Escherichia coli [TaxId: 562]
(5)
1a
d3o6za_
A:
1b
d3o6zb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NUDIX_3o6zB01 (B:44-184)
1b: PFAM_NUDIX_3o6zB02 (B:44-184)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
NUDIX
(85)
Family
:
NUDIX
(78)
Escherichia coli (strain K12)
(28)
1a
NUDIX-3o6zB01
B:44-184
1b
NUDIX-3o6zB02
B:44-184
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Asymmetric Unit 1
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Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
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