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3O6X
Asym. Unit
Info
Asym.Unit (592 KB)
Biol.Unit 1 (579 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TYPE III GLUTAMINE SYNTHETASE FROM BACTEROIDES FRAGILIS
Authors
:
J. M. Van Rooyen, H. Belrhali, V. R. Abratt, B. T. Sewell
Date
:
29 Jul 10 (Deposition) - 09 Mar 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Glutamine Synthetase, Type Iii, Beta Barrel, Dodecamer, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Van Rooyen, V. R. Abratt, H. Belrhali, T. Sewell
Crystal Structure Of Type Iii Glutamine Synthetase: Surprising Reversal Of The Inter-Ring Interface.
Structure V. 19 471 2011
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 36)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
4a: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sa)
4b: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sb)
4c: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sc)
4d: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sd)
4e: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Se)
4f: L-METHIONINE-S-SULFOXIMINE PHOSPHA... (P3Sf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
6
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
12
Ligand/Ion
CHLORIDE ION
3
MG
12
Ligand/Ion
MAGNESIUM ION
4
P3S
6
Ligand/Ion
L-METHIONINE-S-SULFOXIMINE PHOSPHATE
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:215 , HIS A:342 , GLU A:472 , ARG A:474 , P3S A:3001 , ADP A:4001
BINDING SITE FOR RESIDUE MG A 1001
02
AC2
SOFTWARE
GLU A:217 , GLU A:286 , GLU A:293 , P3S A:3001
BINDING SITE FOR RESIDUE MG A 2001
03
AC3
SOFTWARE
GLU A:215 , GLU A:217 , GLU A:286 , VAL A:287 , GLU A:293 , GLY A:338 , SER A:339 , GLY A:340 , HIS A:342 , ARG A:398 , GLU A:403 , MG A:1001 , MG A:2001 , ADP A:4001
BINDING SITE FOR RESIDUE P3S A 3001
04
AC4
SOFTWARE
GLY A:213 , TRP A:214 , GLU A:215 , GLU A:293 , PRO A:296 , PHE A:298 , ASN A:344 , SER A:346 , ASN A:469 , ARG A:470 , GLU A:472 , ARG A:474 , MG A:1001 , P3S A:3001
BINDING SITE FOR RESIDUE ADP A 4001
05
AC5
SOFTWARE
LYS A:721 , ARG A:723 , ASN B:613 , HIS B:614
BINDING SITE FOR RESIDUE CL A 5001
06
AC6
SOFTWARE
GLN A:601 , ARG A:605 , ARG A:674 , ASN A:678
BINDING SITE FOR RESIDUE CL A 6001
07
AC7
SOFTWARE
GLU B:215 , HIS B:342 , GLU B:472 , P3S B:3001 , ADP B:4001
BINDING SITE FOR RESIDUE MG B 1001
08
AC8
SOFTWARE
GLU B:217 , GLU B:286 , GLU B:293 , P3S B:3001
BINDING SITE FOR RESIDUE MG B 2001
09
AC9
SOFTWARE
GLU B:215 , GLU B:217 , GLU B:286 , GLY B:338 , SER B:339 , GLY B:340 , HIS B:342 , ARG B:398 , GLU B:403 , MG B:1001 , MG B:2001 , ADP B:4001
BINDING SITE FOR RESIDUE P3S B 3001
10
BC1
SOFTWARE
GLY B:213 , TRP B:214 , GLU B:215 , GLU B:293 , PRO B:296 , PHE B:298 , ASN B:344 , SER B:346 , ARG B:470 , GLU B:472 , MG B:1001 , P3S B:3001
BINDING SITE FOR RESIDUE ADP B 4001
11
BC2
SOFTWARE
LYS B:721 , ARG B:723 , ASN C:613 , HIS C:614
BINDING SITE FOR RESIDUE CL B 5001
12
BC3
SOFTWARE
GLN B:601 , ARG B:605 , ARG B:674 , ASN B:678
BINDING SITE FOR RESIDUE CL B 6001
13
BC4
SOFTWARE
GLU C:215 , HIS C:342 , GLU C:472 , P3S C:3001 , ADP C:4001
BINDING SITE FOR RESIDUE MG C 1001
14
BC5
SOFTWARE
GLU C:217 , GLU C:286 , GLU C:293 , P3S C:3001
BINDING SITE FOR RESIDUE MG C 2001
15
BC6
SOFTWARE
GLU C:215 , GLU C:217 , GLU C:286 , GLY C:338 , SER C:339 , GLY C:340 , HIS C:342 , ARG C:398 , GLU C:403 , MG C:1001 , MG C:2001 , ADP C:4001
BINDING SITE FOR RESIDUE P3S C 3001
16
BC7
SOFTWARE
GLY C:213 , TRP C:214 , GLU C:215 , GLU C:293 , PRO C:296 , PHE C:298 , ASN C:344 , SER C:346 , ARG C:470 , GLU C:472 , MG C:1001 , P3S C:3001
BINDING SITE FOR RESIDUE ADP C 4001
17
BC8
SOFTWARE
LYS C:721 , ARG C:723 , ASN D:613
BINDING SITE FOR RESIDUE CL C 5001
18
BC9
SOFTWARE
GLN C:601 , ARG C:605 , ARG C:674 , ASN C:678
BINDING SITE FOR RESIDUE CL C 6001
19
CC1
SOFTWARE
GLU D:215 , HIS D:342 , GLU D:472 , P3S D:3001 , ADP D:4001
BINDING SITE FOR RESIDUE MG D 1001
20
CC2
SOFTWARE
GLU D:217 , GLU D:286 , GLU D:293 , P3S D:3001
BINDING SITE FOR RESIDUE MG D 2001
21
CC3
SOFTWARE
GLU D:215 , GLU D:217 , GLU D:286 , GLY D:338 , SER D:339 , GLY D:340 , HIS D:342 , ARG D:398 , GLU D:403 , MG D:1001 , MG D:2001 , ADP D:4001
BINDING SITE FOR RESIDUE P3S D 3001
22
CC4
SOFTWARE
GLY D:213 , TRP D:214 , GLU D:215 , GLU D:293 , PRO D:296 , PHE D:298 , ASN D:344 , SER D:346 , ARG D:470 , GLU D:472 , MG D:1001 , P3S D:3001
BINDING SITE FOR RESIDUE ADP D 4001
23
CC5
SOFTWARE
LYS D:721 , ARG D:723 , ASN E:613 , HIS E:614
BINDING SITE FOR RESIDUE CL D 5001
24
CC6
SOFTWARE
GLN D:601 , ARG D:605 , ARG D:674 , ASN D:678
BINDING SITE FOR RESIDUE CL D 6001
25
CC7
SOFTWARE
GLU E:215 , HIS E:342 , GLU E:472 , P3S E:3001 , ADP E:4001
BINDING SITE FOR RESIDUE MG E 1001
26
CC8
SOFTWARE
GLU E:217 , GLU E:286 , GLU E:293 , P3S E:3001
BINDING SITE FOR RESIDUE MG E 2001
27
CC9
SOFTWARE
GLU E:215 , GLU E:217 , GLU E:286 , GLY E:338 , SER E:339 , GLY E:340 , HIS E:342 , ARG E:398 , GLU E:403 , MG E:1001 , MG E:2001 , ADP E:4001
BINDING SITE FOR RESIDUE P3S E 3001
28
DC1
SOFTWARE
GLY E:213 , TRP E:214 , GLU E:215 , GLU E:293 , PRO E:296 , PHE E:298 , ASN E:344 , SER E:346 , ARG E:470 , GLU E:472 , MG E:1001 , P3S E:3001
BINDING SITE FOR RESIDUE ADP E 4001
29
DC2
SOFTWARE
LYS E:721 , ARG E:723 , ASN F:613 , HIS F:614
BINDING SITE FOR RESIDUE CL E 5001
30
DC3
SOFTWARE
GLN E:601 , ARG E:605 , ARG E:674 , ASN E:678
BINDING SITE FOR RESIDUE CL E 6001
31
DC4
SOFTWARE
GLU F:215 , HIS F:342 , GLU F:472 , P3S F:3001 , ADP F:4001
BINDING SITE FOR RESIDUE MG F 1001
32
DC5
SOFTWARE
GLU F:217 , GLU F:286 , GLU F:293 , P3S F:3001
BINDING SITE FOR RESIDUE MG F 2001
33
DC6
SOFTWARE
GLU F:215 , GLU F:217 , GLU F:286 , GLY F:338 , SER F:339 , GLY F:340 , HIS F:342 , ARG F:398 , GLU F:403 , MG F:1001 , MG F:2001 , ADP F:4001
BINDING SITE FOR RESIDUE P3S F 3001
34
DC7
SOFTWARE
GLY F:213 , TRP F:214 , GLU F:215 , GLU F:293 , PRO F:296 , PHE F:298 , ASN F:344 , SER F:346 , ARG F:470 , GLU F:472 , MG F:1001 , P3S F:3001
BINDING SITE FOR RESIDUE ADP F 4001
35
DC8
SOFTWARE
ASN A:613 , HIS A:614 , LYS F:721 , ARG F:723
BINDING SITE FOR RESIDUE CL A 730
36
DC9
SOFTWARE
GLN F:601 , ARG F:605 , ARG F:674 , ASN F:678
BINDING SITE FOR RESIDUE CL F 6001
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Gln_synt_C_3o6xF01 (F:192-474)
1b: PFAM_Gln_synt_C_3o6xF02 (F:192-474)
1c: PFAM_Gln_synt_C_3o6xF03 (F:192-474)
1d: PFAM_Gln_synt_C_3o6xF04 (F:192-474)
1e: PFAM_Gln_synt_C_3o6xF05 (F:192-474)
1f: PFAM_Gln_synt_C_3o6xF06 (F:192-474)
2a: PFAM_GSIII_N_3o6xF07 (F:25-186)
2b: PFAM_GSIII_N_3o6xF08 (F:25-186)
2c: PFAM_GSIII_N_3o6xF09 (F:25-186)
2d: PFAM_GSIII_N_3o6xF10 (F:25-186)
2e: PFAM_GSIII_N_3o6xF11 (F:25-186)
2f: PFAM_GSIII_N_3o6xF12 (F:25-186)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GCS
(23)
Family
:
Gln-synt_C
(3)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(1)
1a
Gln-synt_C-3o6xF01
F:192-474
1b
Gln-synt_C-3o6xF02
F:192-474
1c
Gln-synt_C-3o6xF03
F:192-474
1d
Gln-synt_C-3o6xF04
F:192-474
1e
Gln-synt_C-3o6xF05
F:192-474
1f
Gln-synt_C-3o6xF06
F:192-474
Clan
:
no clan defined [family: GSIII_N]
(1)
Family
:
GSIII_N
(1)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(1)
2a
GSIII_N-3o6xF07
F:25-186
2b
GSIII_N-3o6xF08
F:25-186
2c
GSIII_N-3o6xF09
F:25-186
2d
GSIII_N-3o6xF10
F:25-186
2e
GSIII_N-3o6xF11
F:25-186
2f
GSIII_N-3o6xF12
F:25-186
[
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]
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