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3O6G
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
LIGAND-BINDING DOMAIN OF GLUA2 (FLIP) IONOTROPIC GLUTAMATE RECEPTOR IN COMPLEX WITH AN ALLOSTERIC MODULATOR
Authors
:
J. K. F. Maclean, R. A. Campbell, I. A. Cumming, K. J. Gillen, J. Gillespi C. Jamieson, B. Kazemier, M. Kiczun, Y. Lamont, A. J. Lyons, F. Martin, J. A. Morrow, J. Pantling, Z. Rankovic, L. Smith
Date
:
29 Jul 10 (Deposition) - 15 Sep 10 (Release) - 08 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transport Protein, Membrane Protein, Fusion Protein, Chimera Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Jamieson, R. A. Campbell, I. A. Cumming, K. J. Gillen, J. Gillespie, B. Kazemier, M. Kiczun, Y. Lamont, A. J. Lyons, J. K. Maclean, F. Martin E. M. Moir, J. A. Morrow, J. Pantling, Z. Rankovic, L. Smith
A Novel Series Of Positive Modulators Of The Ampa Receptor: Structure-Based Lead Optimization.
Bioorg. Med. Chem. Lett. V. 20 6072 2010
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
2a: GLUTAMIC ACID (GLUa)
3a: N-[(3R)-PYRROLIDIN-3-YL]-2-({[3-(T... (O27a)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
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No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
2
GLU
1
Mod. Amino Acid
GLUTAMIC ACID
3
O27
1
Ligand/Ion
N-[(3R)-PYRROLIDIN-3-YL]-2-({[3-(TRIFLUOROMETHYL)-4,5,6,7-TETRAHYDRO-1H-INDAZOL-1-YL]ACETYL}AMINO)-4,5,6,7-TETRAHYDRO-1-BENZOTHIOPHENE-3-CARBOXAMIDE
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , TYR A:220 , HOH A:415 , HOH A:428 , HOH A:430
BINDING SITE FOR RESIDUE GLU A 264
2
AC2
SOFTWARE
HIS A:23 , GLU A:24 , ARG A:31 , LYS A:240 , HOH A:318 , HOH A:328 , HOH A:484 , HOH A:509
BINDING SITE FOR RESIDUE SO4 A 265
3
AC3
SOFTWARE
ASP A:139 , SER A:140 , LYS A:144 , ARG A:148 , HOH A:365 , HOH A:456 , HOH A:468 , HOH A:539 , HOH A:646
BINDING SITE FOR RESIDUE SO4 A 266
4
AC4
SOFTWARE
GLU A:27 , GLY A:28 , ASN A:29 , GLU A:30 , ARG A:149 , HOH A:642 , HOH A:649
BINDING SITE FOR RESIDUE SO4 A 267
5
AC5
SOFTWARE
ILE A:92 , LYS A:104 , PRO A:105 , PHE A:106 , MET A:107 , SER A:108 , SER A:217 , LYS A:218 , GLY A:219 , LEU A:239 , SER A:242 , LEU A:247 , ASP A:248 , HOH A:316 , HOH A:317 , HOH A:319 , HOH A:520
BINDING SITE FOR RESIDUE O27 A 268
6
AC6
SOFTWARE
ARG A:148 , TRP A:159 , ARG A:163 , HOH A:381 , HOH A:634
BINDING SITE FOR RESIDUE EDO A 269
7
AC7
SOFTWARE
GLU A:27 , ARG A:149 , GLU A:243 , HOH A:658
BINDING SITE FOR RESIDUE EDO A 270
8
AC8
SOFTWARE
LYS A:117 , GLU A:201 , MET A:209 , CYS A:261 , HOH A:469
BINDING SITE FOR RESIDUE EDO A 271
9
AC9
SOFTWARE
PRO A:120 , GLU A:122 , ASP A:126
BINDING SITE FOR RESIDUE EDO A 272
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3o6ga_ (A:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3o6ga_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Lig_chan_3o6gA01 (A:120-262)
2a: PFAM_Lig_chan_Glu_bd_3o6gA02 (A:15-80)
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-3o6gA01
A:120-262
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Rattus norvegicus (Rat)
(86)
2a
Lig_chan-Glu_bd-3o6gA02
A:15-80
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Chain A
Asymmetric Unit 1
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