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3O4W
Asym. Unit
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Asym.Unit (332 KB)
Biol.Unit 1 (326 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIMERIC KLHXK1 IN CRYSTAL FORM IV
Authors
:
E. B. Kuettner, K. Kettner, A. Keim, T. M. Kriegel, N. Strater
Date
:
27 Jul 10 (Deposition) - 13 Oct 10 (Release) - 29 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.61
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rnaseh-Like Fold, Hexokinase, Glycolysis, Glucose Repression, Atp Binding, Mig1 Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. B. Kuettner, K. Kettner, A. Keim, D. I. Svergun, D. Volke, D. Singer, R. Hoffmann, E. C. Muller, A. Otto, T. M. Kriegel, N. Strater
Crystal Structure Of Hexokinase Klhxk1 Of Kluyveromyces Lactis: A Molecular Basis For Understanding The Control Of Yeast Hexokinase Functions Via Covalent Modification And Oligomerization.
J. Biol. Chem. V. 285 41019 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEa)
2b: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEb)
2c: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEc)
2d: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
NHE
4
Ligand/Ion
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
3
SO4
18
Ligand/Ion
SULFATE ION
[
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]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:112 , GLU A:136 , HOH A:782 , ASN B:356 , VAL B:374 , ARG B:377 , SO4 B:496 , HOH B:732 , HOH B:889
BINDING SITE FOR RESIDUE NHE A 486
02
AC2
SOFTWARE
HIS A:117 , GLN A:125
BINDING SITE FOR RESIDUE NHE A 487
03
AC3
SOFTWARE
ASN A:209 , ASP A:210 , THR A:211 , ILE A:230 , GLY A:234 , VAL A:235 , ASN A:236 , VAL B:2
BINDING SITE FOR RESIDUE GOL A 488
04
AC4
SOFTWARE
THR A:90 , ASN A:91 , LYS A:111 , ARG A:113 , HOH A:742
BINDING SITE FOR RESIDUE SO4 A 489
05
AC5
SOFTWARE
GLY A:232 , THR A:233 , GLY A:417 , SER A:418 , HOH A:635 , HOH A:749 , VAL B:2 , ARG B:3
BINDING SITE FOR RESIDUE SO4 A 490
06
AC6
SOFTWARE
GLU A:180 , GLY A:181 , HOH A:541 , HOH A:557
BINDING SITE FOR RESIDUE SO4 A 491
07
AC7
SOFTWARE
SER A:292 , ARG A:294 , GLN A:298 , LYS A:302 , TYR A:308
BINDING SITE FOR RESIDUE SO4 A 492
08
AC8
SOFTWARE
GLN A:432 , LYS A:435 , HOH A:516
BINDING SITE FOR RESIDUE SO4 A 493
09
AC9
SOFTWARE
LYS A:444 , MET A:445 , HOH A:593
BINDING SITE FOR RESIDUE SO4 A 494
10
BC1
SOFTWARE
SER A:15 , MET A:16 , ALA A:17
BINDING SITE FOR RESIDUE SO4 A 495
11
BC2
SOFTWARE
PRO A:20 , ALA A:21 , HOH A:804
BINDING SITE FOR RESIDUE SO4 A 496
12
BC3
SOFTWARE
GLY A:417 , SER A:418 , ASN A:421 , ARG A:422 , ARG B:3
BINDING SITE FOR RESIDUE SO4 A 497
13
BC4
SOFTWARE
GLU A:39 , ARG A:42 , LYS A:46 , HOH A:663
BINDING SITE FOR RESIDUE SO4 A 498
14
BC5
SOFTWARE
LYS A:40 , HIS A:276 , LEU A:277 , VAL A:278 , LEU A:279 , HOH A:890 , THR B:32 , LEU B:33 , LYS B:40 , HOH B:533 , HOH B:569 , HOH B:893
BINDING SITE FOR RESIDUE NHE B 486
15
BC6
SOFTWARE
ASN A:356 , VAL A:374 , ARG A:377 , TYR B:112 , CYS B:133 , GLU B:136 , HOH B:631
BINDING SITE FOR RESIDUE NHE B 487
16
BC7
SOFTWARE
VAL A:2 , ASN B:209 , ASP B:210 , THR B:211 , GLY B:234 , ASN B:236 , HOH B:683 , HOH B:775
BINDING SITE FOR RESIDUE GOL B 488
17
BC8
SOFTWARE
VAL A:2 , GLY B:232 , THR B:233 , GLY B:417 , SER B:418 , HOH B:794
BINDING SITE FOR RESIDUE SO4 B 489
18
BC9
SOFTWARE
GLN B:432 , LYS B:435
BINDING SITE FOR RESIDUE SO4 B 490
19
CC1
SOFTWARE
SER B:292 , ARG B:294 , GLN B:298 , LYS B:302 , TYR B:308
BINDING SITE FOR RESIDUE SO4 B 491
20
CC2
SOFTWARE
PHE B:420 , LYS B:427 , VAL B:453 , ALA B:454 , HOH B:518
BINDING SITE FOR RESIDUE SO4 B 492
21
CC3
SOFTWARE
THR B:90 , ASN B:91 , LYS B:111 , ARG B:113
BINDING SITE FOR RESIDUE SO4 B 493
22
CC4
SOFTWARE
LYS A:283 , HIS B:276 , ARG B:281 , VAL B:286 , HOH B:564 , HOH B:680 , HOH B:793 , HOH B:873
BINDING SITE FOR RESIDUE SO4 B 494
23
CC5
SOFTWARE
PRO B:20 , ALA B:21 , HOH B:531
BINDING SITE FOR RESIDUE SO4 B 495
24
CC6
SOFTWARE
NHE A:486 , HOH A:790 , THR B:373 , VAL B:374 , HOH B:559 , HOH B:732
BINDING SITE FOR RESIDUE SO4 B 496
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HEXOKINASE_2 (A:21-468,B:21-468)
2: HEXOKINASE_1 (A:152-177,B:152-177)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXOKINASE_2
PS51748
Hexokinase domain profile.
HXK_KLULA
21-468
2
A:21-468
B:21-468
2
HEXOKINASE_1
PS00378
Hexokinase domain signature.
HXK_KLULA
152-177
2
A:152-177
B:152-177
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3o4wa1 (A:2-223)
1b: SCOP_d3o4wa2 (A:224-485)
1c: SCOP_d3o4wb1 (B:2-223)
1d: SCOP_d3o4wb2 (B:224-485)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
(8)
1a
d3o4wa1
A:2-223
1b
d3o4wa2
A:224-485
1c
d3o4wb1
B:2-223
1d
d3o4wb2
B:224-485
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Hexokinase_1_3o4wB01 (B:21-222)
1b: PFAM_Hexokinase_1_3o4wB02 (B:21-222)
2a: PFAM_Hexokinase_2_3o4wB03 (B:224-472)
2b: PFAM_Hexokinase_2_3o4wB04 (B:224-472)
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Clans
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Families
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(
)
Organisms
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)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
Hexokinase_1
(12)
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yea
(8)
1a
Hexokinase_1-3o4wB01
B:21-222
1b
Hexokinase_1-3o4wB02
B:21-222
Family
:
Hexokinase_2
(12)
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yea
(8)
2a
Hexokinase_2-3o4wB03
B:224-472
2b
Hexokinase_2-3o4wB04
B:224-472
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