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3O4F
Asym. Unit
Info
Asym.Unit (368 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (95 KB)
Biol.Unit 3 (94 KB)
Biol.Unit 4 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SPERMIDINE SYNTHASE FROM E. COLI
Authors
:
X. Zhou, K. L. Tkaczuk, M. Chruszcz, T. K. Chua, W. Minor, J. Sivaraman
Date
:
27 Jul 10 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Aminopropyltransferase, Polyamine Synthase, Rossmann Fold, Polyamine Biosynthesis, Spermidine Biosynthesis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhou, T. K. Chua, K. L. Tkaczuk, J. M. Bujnicki, J. Sivaraman
The Crystal Structure Of Escherichia Coli Spermidine Synthase Spee Reveals A Unique Substrate-Binding Pocket
J. Struct. Biol. V. 169 277 2010
[
close entry info
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Hetero Components
(1, 31)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1aa: SULFATE ION (SO4aa)
1ab: SULFATE ION (SO4ab)
1ac: SULFATE ION (SO4ac)
1ad: SULFATE ION (SO4ad)
1ae: SULFATE ION (SO4ae)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
1y: SULFATE ION (SO4y)
1z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
31
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:243
BINDING SITE FOR RESIDUE SO4 A 289
02
AC2
SOFTWARE
ARG A:97 , ARG A:262
BINDING SITE FOR RESIDUE SO4 A 290
03
AC3
SOFTWARE
ASN A:265 , PRO A:266 , ALA A:267
BINDING SITE FOR RESIDUE SO4 A 291
04
AC4
SOFTWARE
HIS A:12 , ASP A:13 , GLN A:14 , SER E:168 , LEU E:169 , PHE E:170 , THR E:171
BINDING SITE FOR RESIDUE SO4 A 292
05
AC5
SOFTWARE
ARG B:97 , ARG B:262
BINDING SITE FOR RESIDUE SO4 B 289
06
AC6
SOFTWARE
ARG C:243
BINDING SITE FOR RESIDUE SO4 C 289
07
AC7
SOFTWARE
ARG C:97
BINDING SITE FOR RESIDUE SO4 C 290
08
AC8
SOFTWARE
SER C:168 , LEU C:169 , PHE C:170 , THR C:171 , HIS G:12 , ASP G:13 , GLN G:14
BINDING SITE FOR RESIDUE SO4 C 291
09
AC9
SOFTWARE
THR B:171 , LYS C:135
BINDING SITE FOR RESIDUE SO4 C 292
10
BC1
SOFTWARE
GLN C:191 , TYR C:226
BINDING SITE FOR RESIDUE SO4 C 293
11
BC2
SOFTWARE
HIS C:12 , ASP C:13 , GLN C:14 , SER G:168 , LEU G:169 , PHE G:170 , THR G:171
BINDING SITE FOR RESIDUE SO4 C 294
12
BC3
SOFTWARE
ARG D:243
BINDING SITE FOR RESIDUE SO4 D 289
13
BC4
SOFTWARE
ARG D:97 , ARG D:262
BINDING SITE FOR RESIDUE SO4 D 290
14
BC5
SOFTWARE
ASN D:23 , VAL D:24
BINDING SITE FOR RESIDUE SO4 D 291
15
BC6
SOFTWARE
GLN D:147
BINDING SITE FOR RESIDUE SO4 D 292
16
BC7
SOFTWARE
ARG E:243
BINDING SITE FOR RESIDUE SO4 E 289
17
BC8
SOFTWARE
SER A:168 , LEU A:169 , PHE A:170 , THR A:171 , HIS E:12 , ASP E:13 , GLN E:14
BINDING SITE FOR RESIDUE SO4 E 290
18
BC9
SOFTWARE
ARG E:97 , ARG E:262
BINDING SITE FOR RESIDUE SO4 E 291
19
CC1
SOFTWARE
PRO E:184 , ASP E:238 , ASN E:239
BINDING SITE FOR RESIDUE SO4 E 292
20
CC2
SOFTWARE
ARG F:243
BINDING SITE FOR RESIDUE SO4 F 289
21
CC3
SOFTWARE
ARG F:262
BINDING SITE FOR RESIDUE SO4 F 290
22
CC4
SOFTWARE
ARG F:207
BINDING SITE FOR RESIDUE SO4 F 291
23
CC5
SOFTWARE
GLN F:191
BINDING SITE FOR RESIDUE SO4 F 292
24
CC6
SOFTWARE
ARG G:243
BINDING SITE FOR RESIDUE SO4 G 289
25
CC7
SOFTWARE
LEU G:11 , GLY G:193 , VAL G:194 , SO4 G:291
BINDING SITE FOR RESIDUE SO4 G 290
26
CC8
SOFTWARE
VAL G:53 , TYR G:226 , SO4 G:290
BINDING SITE FOR RESIDUE SO4 G 291
27
CC9
SOFTWARE
PRO G:184 , GLY G:185 , ASP G:238 , ASN G:239
BINDING SITE FOR RESIDUE SO4 G 292
28
DC1
SOFTWARE
ARG G:97 , ARG G:262
BINDING SITE FOR RESIDUE SO4 G 293
29
DC2
SOFTWARE
ARG H:97 , ARG H:262
BINDING SITE FOR RESIDUE SO4 H 289
30
DC3
SOFTWARE
ARG H:243
BINDING SITE FOR RESIDUE SO4 H 290
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: PABS_2 (A:9-238,B:9-238,C:9-238,D:9-238,E:...)
2: PABS_1 (A:81-94,B:81-94,C:81-94,D:81-94,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PABS_2
PS51006
Polyamine biosynthesis (PABS) domain profile.
SPEE_ECOLI
9-238
8
A:9-238
B:9-238
C:9-238
D:9-238
E:9-238
F:9-238
G:9-238
H:9-238
2
PABS_1
PS01330
Polyamine biosynthesis (PABS) domain signature.
SPEE_ECOLI
81-94
8
A:81-94
B:81-94
C:81-94
D:81-94
E:81-94
F:81-94
G:81-94
H:81-94
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3o4fa_ (A:)
1b: SCOP_d3o4fb_ (B:)
1c: SCOP_d3o4fc_ (C:)
1d: SCOP_d3o4fd_ (D:)
1e: SCOP_d3o4fe_ (E:)
1f: SCOP_d3o4ff_ (F:)
1g: SCOP_d3o4fg_ (G:)
1h: SCOP_d3o4fh_ (H:)
View:
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Classes
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Folds
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(
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)
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Families
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Escherichia coli K-12 [TaxId: 83333]
(5)
1a
d3o4fa_
A:
1b
d3o4fb_
B:
1c
d3o4fc_
C:
1d
d3o4fd_
D:
1e
d3o4fe_
E:
1f
d3o4ff_
F:
1g
d3o4fg_
G:
1h
d3o4fh_
H:
[
close SCOP info
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CATH Domains
(0, 0 ; only for superseded entry 3ADN: 1,8)
Info
all CATH domains
1a: CATH_3adnA02 ()
1b: CATH_3adnC02 ()
1c: CATH_3adnF02 ()
1d: CATH_3adnH02 ()
1e: CATH_3adnE02 ()
1f: CATH_3adnG02 ()
1g: CATH_3adnB02 ()
1h: CATH_3adnD02 ()
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Label:
Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Spermine_synth_3o4fH01 (H:5-247)
1b: PFAM_Spermine_synth_3o4fH02 (H:5-247)
1c: PFAM_Spermine_synth_3o4fH03 (H:5-247)
1d: PFAM_Spermine_synth_3o4fH04 (H:5-247)
1e: PFAM_Spermine_synth_3o4fH05 (H:5-247)
1f: PFAM_Spermine_synth_3o4fH06 (H:5-247)
1g: PFAM_Spermine_synth_3o4fH07 (H:5-247)
1h: PFAM_Spermine_synth_3o4fH08 (H:5-247)
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Clans
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Families
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Organisms
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)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Spermine_synth
(12)
Escherichia coli (strain K12)
(1)
1a
Spermine_synth-3o4fH01
H:5-247
1b
Spermine_synth-3o4fH02
H:5-247
1c
Spermine_synth-3o4fH03
H:5-247
1d
Spermine_synth-3o4fH04
H:5-247
1e
Spermine_synth-3o4fH05
H:5-247
1f
Spermine_synth-3o4fH06
H:5-247
1g
Spermine_synth-3o4fH07
H:5-247
1h
Spermine_synth-3o4fH08
H:5-247
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Asym.Unit (368 KB)
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