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3O2Y
Asym. Unit
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Asym.Unit (116 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
STRUCTURE-FUNCTION ANALYSIS OF HUMAN L-PROSTAGLANDIN D SYNTHASE BOUND WITH FATTY ACID
Authors
:
Y. Zhou, N. Shaw, Y. Li, Y. Zhao, R. Zhang, Z. -J. Liu
Date
:
23 Jul 10 (Deposition) - 22 Sep 10 (Release) - 22 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lipocalin, Prostaglandin Synthase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhou, N. Shaw, Y. Li, Y. Zhao, R. Zhang, Z. -J. Liu
Structure-Function Analysis Of Human L-Prostaglandin D Synthase Bound With Fatty Acid
To Be Published
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: OLEIC ACID (OLAa)
2b: OLEIC ACID (OLAb)
3a: PALMITIC ACID (PLMa)
3b: PALMITIC ACID (PLMb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
OLA
2
Ligand/Ion
OLEIC ACID
3
PLM
2
Ligand/Ion
PALMITIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:45 , LEU A:48 , LEU A:55 , LYS A:59 , LEU A:62 , MET A:64 , SER A:81 , PHE A:83 , MET A:94 , MET A:145 , THR A:147 , PLM A:201 , HOH A:272
BINDING SITE FOR RESIDUE OLA A 200
2
AC2
SOFTWARE
SER A:52 , LEU A:79 , MET A:94 , TYR A:116 , SER A:133 , PHE A:143 , MET A:145 , TYR A:149 , OLA A:200 , HOH A:237 , HOH A:256 , HOH A:272
BINDING SITE FOR RESIDUE PLM A 201
3
AC3
SOFTWARE
LEU B:55 , LYS B:59 , LEU B:62 , MET B:64 , PHE B:83 , MET B:94 , MET B:145 , THR B:147 , TYR B:149 , PLM B:203
BINDING SITE FOR RESIDUE OLA B 202
4
AC4
SOFTWARE
ASP A:142 , ASN B:51 , SER B:52 , TRP B:54 , LEU B:55 , MET B:94 , SER B:133 , PHE B:143 , MET B:145 , OLA B:202 , HOH B:221 , HOH B:228
BINDING SITE FOR RESIDUE PLM B 203
5
AC5
SOFTWARE
THR B:73 , ASN B:78
BINDING SITE FOR RESIDUE GOL B 252
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_004273 (R56Q, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_004273
R
56
Q
PTGDS_HUMAN
Polymorphism
11552179
A/B
R
56
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (A:33-46,B:33-46)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
PTGDS_HUMAN
33-46
2
A:33-46
B:33-46
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3o2ya_ (A:)
1b: SCOP_d3o2yb_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d3o2ya_
A:
1b
d3o2yb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lipocalin_3o2yB01 (B:40-184)
1b: PFAM_Lipocalin_3o2yB02 (B:40-184)
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Clans
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Organisms
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)
Clan
:
Calycin
(163)
Family
:
Lipocalin
(123)
Homo sapiens (Human)
(41)
1a
Lipocalin-3o2yB01
B:40-184
1b
Lipocalin-3o2yB02
B:40-184
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Show PDB file:
Asym.Unit (116 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
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